| s20x |
Functions for University of Auckland Course STATS 201/208 Data Analysis |
| s2dverification |
Set of Common Tools for Forecast Verification |
| S2sls |
Spatial Two Stage Least Squares Estimation |
| s4vd |
Biclustering via Sparse Singular Value Decomposition Incorporating Stability Selection |
| saasCNV |
Somatic Copy Number Alteration Analysis Using Sequencing and SNP Array Data |
| Sabermetrics |
Sabermetrics Functions for Baseball Analytics |
| sac |
Semiparametric Analysis of Changepoint |
| saccades |
Detection of Fixations in Eye-Tracking Data |
| SACCR |
SA Counterparty Credit Risk under Basel III |
| SACOBRA |
Self-Adjusting COBRA |
| sadists |
Some Additional Distributions |
| sads |
Maximum Likelihood Models for Species Abundance Distributions |
| sae |
Small Area Estimation |
| sae2 |
Small Area Estimation: Time-series Models |
| saemix |
Stochastic Approximation Expectation Maximization (SAEM) algorithm |
| SAENET |
A Stacked Autoencoder Implementation with Interface to 'neuralnet' |
| saeRobust |
Robust Small Area Estimation |
| saery |
Small Area Estimation for Rao and Yu Model |
| saeSim |
Simulation Tools for Small Area Estimation |
| SAFD |
Statistical Analysis of Fuzzy Data |
| SafeBayes |
Generalized and Safe-Bayesian Ridge and Lasso Regression |
| safeBinaryRegression |
Safe Binary Regression |
| SafeQuant |
A Toolbox for the Analysis of Proteomics Data |
| safi |
Sensitivity Analysis for Functional Input |
| SAGA |
Software for the Analysis of Genetic Architecture |
| SALES |
Elastic Net and (Adaptive) Lasso Penalized Sparse Asymmetric Least Squares (SALES) and Coupled Sparse Asymmetric Least Squares (COSALES) using Coordinate Descent and Proximal Gradient Algorithms |
| SALTSampler |
Efficient Sampling on the Simplex |
| SAM |
Sparse Additive Modelling |
| SAMM |
Some Algorithms for Mixed Models |
| SamplerCompare |
A Framework for Comparing the Performance of MCMC Samplers |
| sampleSelection |
Sample Selection Models |
| samplesize |
Sample Size Calculation for Various t-Tests and Wilcoxon-Test |
| Sample.Size |
Sample size calculation |
| samplesize4surveys |
Sample Size Calculations for Complex Surveys |
| SampleSizeMeans |
Sample size calculations for normal means |
| SampleSizeProportions |
Calculating sample size requirements when estimating the difference between two binomial proportions |
| sampling |
Survey Sampling |
| samplingbook |
Survey Sampling Procedures |
| samplingEstimates |
Sampling Estimates |
| SamplingStrata |
Optimal Stratification of Sampling Frames for Multipurpose Sampling Surveys |
| samplingVarEst |
Sampling Variance Estimation |
| sampSurf |
Sampling Surface Simulation for Areal Sampling Methods |
| samr |
SAM: Significance Analysis of Microarrays |
| SAMUR |
Stochastic Augmentation of Matched Data Using Restriction Methods |
| SAMURAI |
Sensitivity Analysis of a Meta-analysis with Unpublished but Registered Analytical Investigations |
| sand |
Statistical Analysis of Network Data with R |
| sandwich |
Robust Covariance Matrix Estimators |
| sanitizers |
C/C++ source code to trigger Address and Undefined Behaviour Sanitizers |
| sankey |
Sankey Diagrams |
| sanon |
Stratified Analysis with Nonparametric Covariable Adjustment |
| sapa |
Spectral Analysis for Physical Applications |
| SAPP |
Statistical Analysis of Point Processes |
| sas7bdat |
SAS Database Reader (experimental) |
| SAScii |
Import ASCII files directly into R using only a SAS input script |
| SASmixed |
Data sets from "SAS System for Mixed Models" |
| SASPECT |
Significant AnalysiS of PEptide CounTs |
| SASxport |
Read and Write 'SAS' 'XPORT' Files |
| satellite |
Various Functions for Handling and Manipulating Remote Sensing Data |
| saturnin |
Spanning Trees Used for Network Inference |
| SAVE |
Bayesian Emulation, Calibration and Validation of Computer Models |
| saves |
Fast load variables |
| saws |
Small-Sample Adjustments for Wald tests Using Sandwich Estimators |
| sBF |
Smooth Backfitting |
| sbfc |
Selective Bayesian Forest Classifier |
| sbgcop |
Semiparametric Bayesian Gaussian copula estimation and imputation |
| sbioPN |
sbioPN: Simulation of deterministic and stochastic spatial biochemical reaction networks using Petri Nets |
| sbmSDP |
Semidefinite Programming for Fitting Block Models of Equal Block Sizes |
| SBRect |
Detecting structural breaks using rectangle covering (non-parametric method) |
| sbrl |
Scalable Bayesian Rule Lists Model |
| SBSA |
Simplified Bayesian Sensitivity Analysis |
| sbtools |
USGS ScienceBase Tools |
| sca |
Simple Component Analysis |
| scagnostics |
Compute scagnostics - scatterplot diagnostics |
| Scale |
Likert Type Questionnaire Item Analysis |
| scales |
Scale Functions for Visualization |
| scalreg |
Scaled sparse linear regression |
| scam |
Shape Constrained Additive Models |
| scape |
Statistical Catch-at-Age Plotting Environment |
| scar |
Shape-Constrained Additive Regression: a Maximum Likelihood Approach |
| scaRabee |
Optimization Toolkit for Pharmacokinetic-Pharmacodynamic Models |
| scatterD3 |
D3 JavaScript Scatterplot from R |
| scatterplot3d |
3D Scatter Plot |
| SCBmeanfd |
Simultaneous Confidence Bands for the Mean of Functional Data |
| scenario |
Construct Reduced Trees with Predefined Nodal Structures |
| SCEPtER |
Stellar CharactEristics Pisa Estimation gRid |
| SCEPtERbinary |
Stellar CharactEristics Pisa Estimation gRid for Binary Systems |
| SCGLR |
Supervised Component Generalized Linear Regression |
| SchemaOnRead |
Automated Schema on Read |
| scholar |
Analyse Citation Data from Google Scholar |
| schoolmath |
Functions and datasets for math used in school |
| schoRsch |
Tools for Analyzing Factorial Experiments |
| schumaker |
Schumaker Shape-Preserving Spline |
| schwartz97 |
A package on the Schwartz two-factor commodity model |
| SCI |
Standardized Climate Indices Such as SPI, SRI or SPEI |
| scidb |
An R Interface to SciDB |
| SciencesPo |
A Tool Set for Analyzing Political Behavior Data |
| scientoText |
Text & Scientometric Analytics |
| scio |
Sparse Column-wise Inverse Operator |
| sciplot |
Scientific Graphing Functions for Factorial Designs |
| SciViews |
SciViews GUI API - Main package |
| sclero |
Measure Growth Patterns and Align Sampling Spots in Photographs |
| SCMA |
Single-Case Meta-Analysis |
| scmamp |
Statistical Comparison of Multiple Algorithms in Multiple Problems |
| score |
A Package to Score Behavioral Questionnaires |
| ScoreGGUM |
Score Persons Using the Generalized Graded Unfolding Model |
| scorer |
Quickly Score Models in Data Science and Machine Learning |
| SCORER2 |
SCORER 2.0: an algorithm for distinguishing parallel dimeric and trimeric coiled-coil sequences |
| scoring |
Proper scoring rules |
| scoringRules |
Scoring Rules for Parametric and Simulated Distribution Forecasts |
| ScottKnott |
The ScottKnott Clustering Algorithm |
| scout |
Implements the Scout Method for Covariance-Regularized Regression |
| SCperf |
Supply Chain Perform |
| ScrabbleScore |
Calculates Scrabble score for strings |
| scrapeR |
Tools for Scraping Data from HTML and XML Documents |
| ScreenClean |
Screen and clean variable selection procedures |
| scrime |
Analysis of High-Dimensional Categorical Data such as SNP Data |
| scriptests |
Transcript-Based Unit Tests that are Easy to Create and Maintain |
| scrm |
Simulating the Evolution of Biological Sequences |
| SCRT |
Single-Case Randomization Tests |
| scrubr |
Clean Biological Occurrence Records |
| scrypt |
scrypt key derivation functions for R |
| scs |
Splitting Conic Solver |
| scuba |
Diving Calculations and Decompression Models |
| SCVA |
Single-Case Visual Analysis |
| sda |
Shrinkage Discriminant Analysis and CAT Score Variable Selection |
| SDaA |
Sampling: Design and Analysis |
| sdat |
Signal Detection via Adaptive Test |
| sdcMicro |
Statistical Disclosure Control Methods for Anonymization of Microdata and Risk Estimation |
| sdcMicroGUI |
Graphical User Interface for Package 'sdcMicro' |
| sdcTable |
Methods for Statistical Disclosure Control in Tabular Data |
| sdcTarget |
Statistical Disclosure Control Substitution Matrix Calculator |
| SDD |
Serial Dependence Diagrams |
| SDDE |
Shortcuts, Detours and Dead Ends (SDDE) Path Types in Genome Similarity Networks |
| sddpack |
Semidiscrete Decomposition |
| sde |
Simulation and Inference for Stochastic Differential Equations |
| sdef |
Synthesizing List of Differentially Expressed Features |
| SDEFSR |
Subgroup Discovery with Evolutionary Fuzzy Systems in R |
| sdm |
Species Distribution Modelling |
| SDMTools |
Species Distribution Modelling Tools: Tools for processing data associated with species distribution modelling exercises |
| sdmvspecies |
Create Virtual Species for Species Distribution Modelling |
| sdnet |
Soft-Discretization-Based Bayesian Network Inference |
| sdPrior |
Scale-Dependent Hyperpriors in Structured Additive Distributional Regression |
| sdprisk |
Measures of Risk for the Compound Poisson Risk Process with Diffusion |
| SDraw |
Spatially Balanced Sample Draws for Spatial Objects |
| sdtoolkit |
Scenario Discovery Tools to Support Robust Decision Making |
| sdwd |
Sparse Distance Weighted Discrimination |
| seacarb |
Seawater Carbonate Chemistry |
| sealasso |
Standard Error Adjusted Adaptive Lasso |
| searchable |
Tools for Custom Searches / Subsets / Slices of Named R Objects |
| searchConsoleR |
Google Search Console R Client |
| SearchTrees |
Spatial Search Trees |
| seas |
Seasonal analysis and graphics, especially for climatology |
| SEAsic |
Score Equity Assessment- summary index computation |
| season |
Seasonal analysis of health data |
| seasonal |
R Interface to X-13-ARIMA-SEATS |
| seawaveQ |
U.S. Geological Survey seawaveQ model |
| SEchart |
SEchart |
| SecKW |
The SecKW Distribution |
| SECP |
Statistical Estimation of Cluster Parameters (SECP) |
| secr |
Spatially Explicit Capture-Recapture |
| secrdesign |
Sampling Design for Spatially Explicit Capture-Recapture |
| secrlinear |
Spatially Explicit Capture-Recapture for Linear Habitats |
| seeclickfixr |
Access Data from the SeeClickFix Web API |
| seedy |
Simulation of Evolutionary and Epidemiological Dynamics |
| seeg |
Statistics for Environmental Sciences, Engineering, and Geography |
| seem |
Simulation of Ecological and Environmental Models |
| SEER2R |
reading and writing SEER*STAT data files |
| SEERaBomb |
SEER and Atomic Bomb Survivor Data Analysis Tools |
| seewave |
Sound Analysis and Synthesis |
| seg |
A set of tools for measuring spatial segregation |
| SegCorr |
Detecting Correlated Genomic Regions |
| segmag |
Determine Event Boundaries in Event Segmentation Experiments |
| segmented |
Regression Models with Breakpoints/Changepoints Estimation |
| Segmentor3IsBack |
A Fast Segmentation Algorithm |
| SEHmodel |
Spatial Exposure-Hazard Model for Exposure and Impact Assessment on Exposed Individuals |
| seismic |
Predict Information Cascade by Self-Exciting Point Process |
| seismicRoll |
Fast Rolling Functions for Seismology using Rcpp |
| sejmRP |
An Information About Deputies and Votings in Polish Diet from Seventh to Eighth Term of Office |
| Sejong |
KoNLP static dictionaries and Sejong project resources |
| SEL |
Semiparametric elicitation |
| selection |
Correcting Biased Estimates Under Selection |
| selectiongain |
A Tool for Calculation and Optimization of the Expected Gain from Multi-Stage Selection |
| selectiveInference |
Tools for Post-Selection Inference |
| selectMeta |
Estimation of Weight Functions in Meta Analysis |
| selectr |
Translate CSS Selectors to XPath Expressions |
| selectspm |
Select Point Pattern Models Based on Minimum Contrast, AIC and Goodness of Fit |
| SeleMix |
Selective Editing via Mixture models |
| selfea |
Select Features Reliably with Cohen's Effect Sizes |
| selfingTree |
Genotype Probabilities in Intermediate Generations of Inbreeding Through Selfing |
| SelvarMix |
Regularization for Variable Selection in Model-Based Clustering and Discriminant Analysis |
| sem |
Structural Equation Models |
| semdiag |
Structural equation modeling diagnostics |
| semds |
Structural Equation Multidimensional Scaling |
| semGOF |
Goodness-of-fit indexes for structural equation models |
| semiArtificial |
Generator of Semi-Artificial Data |
| SemiCompRisks |
Hierarchical Models for Parametric and Semi-Parametric Analyses of Semi-Competing Risks Data |
| SEMID |
Identifiability of Linear Structural Equation Models |
| SemiMarkov |
Multi-States Semi-Markov Models |
| SemiPar |
Semiparametic Regression |
| SemiParBIVProbit |
Semiparametric Copula Regression Models |
| SemiParSampleSel |
Semiparametric Sample Selection Modelling with Continuous or Discrete Response |
| semisupKernelPCA |
Kernel PCA projection, and semi-supervised variant |
| SEMModComp |
Model Comparisons for SEM |
| semPlot |
Path diagrams and visual analysis of various SEM packages' output |
| semPLS |
Structural Equation Modeling Using Partial Least Squares |
| semsfa |
Semiparametric Estimation of Stochastic Frontier Models |
| semTools |
Useful Tools for Structural Equation Modeling |
| sendmailR |
send email using R |
| sendplot |
Tool for sending interactive plots with tool-tip content |
| sensiPhy |
Sensitivity Analysis for Comparative Methods |
| sensitivity |
Global Sensitivity Analysis of Model Outputs |
| sensitivity2x2xk |
Sensitivity Analysis for 2x2xk Tables in Observational Studies |
| SensitivityCaseControl |
Sensitivity Analysis for Case-Control Studies |
| sensitivitymv |
Sensitivity Analysis in Observational Studies |
| sensitivitymw |
Sensitivity analysis using weighted M-statistics |
| sensitivityPStrat |
Principal Stratification Sensitivity Analysis Functions |
| SensMixed |
Analysis of Sensory and Consumer Data in a Mixed Model Framework |
| SensoMineR |
Sensory data analysis with R |
| sensory |
Simultaneous Model-Based Clustering and Imputation via a Progressive Expectation-Maximization Algorithm |
| sensR |
Thurstonian Models for Sensory Discrimination |
| SenSrivastava |
Datasets from Sen & Srivastava |
| SensusR |
Sensus Analytics |
| sEparaTe |
Maximum Likelihood Estimation and Likelihood Ratio Test Functions for Separable Variance-Covariance Structures |
| separationplot |
Separation Plots |
| seqCBS |
CN Profiling using Sequencing and CBS |
| seqDesign |
Simulation and Group Sequential Monitoring of Randomized Two-Stage Treatment Efficacy Trials with Time-to-Event Endpoints |
| SeqFeatR |
A Tool to Associate FASTA Sequences and Features |
| SeqGrapheR |
Simple GUI for Graph Based Visualization of Cluster of DNA Sequence Reads |
| seqHMM |
Hidden Markov Models for Life Sequences and Other Multivariate, Multichannel Categorical Time Series |
| seqinr |
Biological Sequences Retrieval and Analysis |
| SeqMADE |
Network Module-Based Model in the Differential Expression Analysis for RNA-Seq |
| seqMeta |
Meta-Analysis of Region-Based Tests of Rare DNA Variants |
| seqminer |
Efficiently Read Sequence Data (VCF Format, BCF Format and METAL Format) into R |
| seqmon |
Sequential Monitoring of Clinical Trials |
| seqPERM |
Generates a permutation matrix based upon a sequence |
| seqRFLP |
Simulation and visualization of restriction enzyme cutting pattern from DNA sequences |
| seqtest |
Sequential Triangular Test |
| sequences |
Generic and Biological Sequences |
| Sequential |
Exact Sequential Analysis for Poisson and Binomial Data |
| sequenza |
Copy Number Estimation from Tumor Genome Sequencing Data |
| serial |
The Serial Interface Package |
| seriation |
Infrastructure for Ordering Objects Using Seriation |
| seroincidence |
Estimating Infection Rates from Serological Data |
| servr |
A Simple HTTP Server to Serve Static Files or Dynamic Documents |
| sesem |
Spatially Explicit Structural Equation Modeling |
| session |
Functions for interacting with, saving and restoring R sessions |
| SetMethods |
SetMethods: A Package Companion to "Set-Theoretic Methods for the Social Sciences" |
| SETPath |
Spiked Eigenvalue Test for Pathway data |
| SetRank |
Advanced Gene Set Enrichment Analysis |
| setRNG |
Set (Normal) Random Number Generator and Seed |
| sets |
Sets, Generalized Sets, Customizable Sets and Intervals |
| setter |
Mutators that Work with Pipes |
| settings |
Software Option Settings Manager for R |
| setwidth |
Automatically Set the Width Option on Terminal Emulators |
| severity |
Mayo's Post-data Severity Evaluation |
| sExtinct |
Calculates the historic date of extinction given a series of sighting events |
| sfa |
Stochastic Frontier Analysis |
| sfinx |
Straightforward Filtering Index for AP-MS Data Analysis (SFINX) |
| sfsmisc |
Utilities from "Seminar fuer Statistik" ETH Zurich |
| sft |
Functions for Systems Factorial Technology Analysis of Data |
| SGCS |
Spatial Graph Based Clustering Summaries for Spatial Point Patterns |
| sgd |
Stochastic Gradient Descent for Scalable Estimation |
| sgeostat |
An Object-Oriented Framework for Geostatistical Modeling in S+ |
| SGL |
Fit a GLM (or cox model) with a combination of lasso and group lasso regularization |
| sglasso |
Lasso Method for RCON(V,E) Models |
| sglOptim |
Generic Sparse Group Lasso Solver |
| sglr |
An R package for power and boundary calculations in pre-licensure vaccine trials using a sequential generalized likelihood ratio test |
| sgof |
Multiple Hypothesis Testing |
| SGP |
Student Growth Percentiles & Percentile Growth Trajectories |
| sGPCA |
Sparse Generalized Principal Component Analysis |
| SGPdata |
Exemplar Data Sets for SGP Analyses |
| sgPLS |
Sparse Group Partial Least Square Methods |
| sgr |
Sample Generation by Replacement |
| sgRSEA |
Enrichment Analysis of CRISPR/Cas9 Knockout Screen Data |
| sgt |
Skewed Generalized T Distribution Tree |
| shades |
Simple Colour Manipulation |
| shape |
Functions for plotting graphical shapes, colors |
| ShapeChange |
Change-Point Estimation using Shape-Restricted Splines |
| shapefiles |
Read and Write ESRI Shapefiles |
| ShapePattern |
Tools for Analyzing Planar Shape and Associated Patterns |
| shapeR |
Collection and Analysis of Otolith Shape Data |
| shapes |
Statistical Shape Analysis |
| ShapeSelectForest |
Shape Selection for Landsat Time Series of Forest Dynamics |
| SharpeR |
Statistical Significance of the Sharpe Ratio |
| sharpshootR |
A Soil Survey Toolkit |
| sharx |
Models and Data Sets for the Study of Species-Area Relationships |
| shazam |
Immunoglobulin Somatic Hypermutation Analysis |
| SHELF |
Tools to Support the Sheffield Elicitation Framework (SHELF) |
| shiny |
Web Application Framework for R |
| shinyAce |
Ace Editor Bindings for Shiny |
| shinybootstrap2 |
Bootstrap 2 Web Components for Use with Shiny |
| shinyBS |
Twitter Bootstrap Components for Shiny |
| shinydashboard |
Create Dashboards with 'Shiny' |
| shinyDND |
Shiny Drag-n-Drop |
| shinyFiles |
A Server-Side File System Viewer For Shiny |
| ShinyItemAnalysis |
Test and Item Analysis via Shiny |
| shinyjs |
Perform Common JavaScript Operations in Shiny Apps using Plain R Code |
| shinyRGL |
Shiny Wrappers for RGL |
| shinystan |
Interactive Visual and Numerical Diagnostics and Posterior Analysis for Bayesian Models |
| shinythemes |
Themes for Shiny |
| shinyTime |
A Time Input Widget for Shiny |
| shinytoastr |
Notifications from 'Shiny' |
| shinyTree |
jsTree Bindings for Shiny |
| SHIP |
SHrinkage covariance Incorporating Prior knowledge |
| SHLR |
Shared Haplotype Length Regression |
| shock |
Slope Heuristic for Block-Diagonal Covariance Selection in High Dimensional Gaussian Graphical Models |
| shopifyr |
An R Interface to the Shopify API |
| shotGroups |
Analyze Shot Group Data |
| showtext |
Using Fonts More Easily in R Graphs |
| showtextdb |
Font Files for the 'showtext' Package |
| shp2graph |
Convert a SpatialLinesDataFrame object to a "igraph-class" object |
| shrink |
Global, Parameterwise and Joint Shrinkage Factor Estimation |
| Shrinkage |
Several Shrinkage Effect-Size Estimators |
| ShrinkCovMat |
Shrinkage Covariance Matrix Estimators |
| shuffle |
The Shuffle Estimator for Explainable Variance |
| siar |
Stable Isotope Analysis in R |
| SIBER |
Stable Isotope Bayesian Ellipses in R |
| SID |
Structural Intervention Distance |
| sideChannelAttack |
Side Channel Attack |
| SIDES |
Subgroup Identification Based on Differential Effect Search |
| sidier |
Substitution and Indel Distances to Infer Evolutionary Relationships |
| sievetest |
Sieve test reporting functions |
| sig |
Print Function Signatures |
| sigclust |
Statistical Significance of Clustering |
| SightabilityModel |
Wildlife Sightability Modeling |
| sigloc |
Signal Location Estimation |
| sigmoid |
Sigmoid Functions for Machine Learning |
| signal |
Signal Processing |
| signalHsmm |
Predict Presence of Signal Peptides |
| signmedian.test |
Perform Exact Sign Test and Asymptotic Sign Test in Large Samples |
| sigora |
Signature Overrepresentation Analysis |
| SigTree |
Identify and Visualize Significantly Responsive Branches in a Phylogenetic Tree |
| SII |
Calculate ANSI S3.5-1997 Speech Intelligibility Index |
| simba |
A Collection of functions for similarity analysis of vegetation data |
| simboot |
Simultaneous inference for diversity indices |
| simcausal |
Simulating Longitudinal Data with Causal Inference Applications |
| SimComp |
Simultaneous Comparisons for Multiple Endpoints |
| SimCorMultRes |
Simulates Correlated Multinomial Responses |
| simctest |
Safe Implementation of Monte Carlo Tests |
| SimDesign |
Structure for Organizing Monte Carlo Simulation Designs |
| Sim.DiffProc |
Simulation of Diffusion Processes |
| simecol |
Simulation of Ecological (and Other) Dynamic Systems |
| simest |
Constrained Single Index Model Estimation |
| simex |
SIMEX- and MCSIMEX-Algorithm for measurement error models |
| simexaft |
simexaft |
| simFrame |
Simulation framework |
| SimHaz |
Simulated Survival and Hazard Analysis for Time-Dependent Exposure |
| SimilarityMeasures |
Trajectory Similarity Measures |
| Simile |
Interact with Simile Models |
| SimInf |
A Framework for Data-Driven Stochastic Disease Spread Simulations |
| simLife |
Simulation of Fatigue Lifetimes |
| simmer |
Discrete-Event Simulation for R |
| simmr |
A Stable Isotope Mixing Model |
| SIMMS |
Subnetwork Integration for Multi-Modal Signatures |
| simMSM |
Simulation of Event Histories for Multi-State Models |
| simone |
Statistical Inference for MOdular NEtworks (SIMoNe) |
| simPATHy |
Simulation Model of Expression Data for Pathway Analysis |
| simPH |
Tools for Simulating and Plotting Quantities of Interest Estimated from Cox Proportional Hazards Models |
| simpleboot |
Simple Bootstrap Routines |
| simplegraph |
Simple Graph Data Types and Basic Algorithms |
| simpleNeural |
An Easy to Use Multilayer Perceptron |
| simpleRCache |
Simple R Cache |
| SimpleTable |
Bayesian Inference and Sensitivity Analysis for Causal Effects from 2 x 2 and 2 x 2 x K Tables in the Presence of Unmeasured Confounding |
| simplexreg |
Regression Analysis of Proportional Data Using Simplex Distribution |
| SimplicialCubature |
Integration of Functions Over Simplices |
| simplr |
Basic Symbolic Expression Simplification |
| simPop |
Simulation of Synthetic Populations for Survey Data Considering Auxiliary Information |
| Simpsons |
Detecting Simpson's Paradox |
| simr |
Power Analysis for Generalised Linear Mixed Models by Simulation |
| SimRAD |
Simulations to Predict the Number of RAD and GBS Loci |
| SimReg |
Similarity Regression Functions |
| simrel |
Linear Model Data Simulation and Design of Computer Experiments |
| SiMRiv |
Individual-Based, Spatially-Explicit Simulation and Analysis of Multi-State Movements in River Networks and Heterogeneous Landscapes |
| simsalapar |
Tools for Simulation Studies in Parallel |
| simsem |
SIMulated Structural Equation Modeling |
| SimSeq |
Nonparametric Simulation of RNA-Seq Data |
| simstudy |
Simulation of Study Data |
| simSummary |
Simulation summary |
| simTool |
Conduct Simulation Studies with a Minimal Amount of Source Code |
| SimuChemPC |
Simulation process of 4 selection methods in predicting chemical potent compounds |
| simulator |
An Engine for Running Simulations |
| SimultAnR |
Correspondence and Simultaneous Analysis |
| SIN |
A SINful Approach to Selection of Gaussian Graphical Markov Models |
| sinaplot |
An Enhanced Chart for Simple and Truthful Representation of Single Observations over Multiple Classes |
| SinIW |
The SinIW Distribution |
| siplab |
Spatial Individual-Plant Modelling |
| sirad |
Functions for Calculating Daily Solar Radiation and Evapotranspiration |
| siRSM |
Single-Index Response Surface Models |
| sirt |
Supplementary Item Response Theory Models |
| SIS |
Sure Independence Screening |
| sisal |
Sequential Input Selection Algorithm |
| sisus |
SISUS: Stable Isotope Sourcing using Sampling |
| sisVIVE |
Some Invalid Some Valid Instrumental Variables Estimator |
| sitar |
Super Imposition by Translation and Rotation Growth Curve Analysis |
| sitmo |
Parallel Pseudo Random Number Generator (PPRNG) 'sitmo' Header Files |
| sitools |
Format a number to a string with SI prefix |
| sivipm |
Sensitivity Indices with Dependent Inputs |
| SixSigma |
Six Sigma Tools for Quality Control and Improvement |
| SizeEstimation |
Estimating the Sizes of Populations at Risk of HIV Infection from Multiple Data Sources Using a Bayesian Hierarchical Model |
| sizeMat |
Estimate Size at Sexual Maturity |
| SiZer |
SiZer: Significant Zero Crossings |
| sjdbc |
JDBC Driver Interface |
| sjmisc |
Data Transformation and Labelled Data Utility Functions |
| sjPlot |
Data Visualization for Statistics in Social Science |
| sjstats |
Collection of Convenient Functions for Common Statistical Computations |
| SKAT |
SNP-Set (Sequence) Kernel Association Test |
| skatMeta |
Efficient meta analysis for the SKAT test |
| skda |
Sparse (Multicategory) Kernel Discriminant Analysis |
| skellam |
Densities and Sampling for the Skellam Distribution |
| SkewHyperbolic |
The Skew Hyperbolic Student t-Distribution |
| skewt |
The Skewed Student-t Distribution |
| Skillings.Mack |
The Skillings-Mack Test Statistic for Block Designs with Missing Observations |
| skmeans |
Spherical k-Means Clustering |
| Sky |
Canopy Openness Analyzer Package |
| sla |
Two-Group Straight Line ANCOVA |
| slackr |
Send Messages, Images, R Objects and Files to 'Slack' Channels/Users |
| slam |
Sparse Lightweight Arrays and Matrices |
| SLC |
Slope and level change |
| sld |
Estimation and Use of the Quantile-Based Skew Logistic Distribution |
| SLDAssay |
Serial Limiting Dilution Assay Statistics |
| sleekts |
4253H, Twice Smoothing |
| Sleuth2 |
Data Sets from Ramsey and Schafer's "Statistical Sleuth (2nd Ed)" |
| Sleuth3 |
Data Sets from Ramsey and Schafer's "Statistical Sleuth (3rd Ed)" |
| slfm |
Tools for Fitting Sparse Latent Factor Model |
| SLHD |
Maximin-Distance (Sliced) Latin Hypercube Designs |
| SLOPE |
Sorted L1 Penalized Estimation (SLOPE) |
| slp |
Discrete Prolate Spheroidal (Slepian) Sequence Regression Smoothers |
| sm |
Smoothing methods for nonparametric regression and density estimation |
| smaa |
Stochastic Multi-Criteria Acceptability Analysis |
| smac |
Sparse Multi-category Angle-Based Large-Margin Classifiers |
| smacof |
Multidimensional Scaling |
| smacpod |
Statistical Methods for the Analysis of Case-Control Point Data |
| smallarea |
Fits a Fay Herriot Model |
| smam |
Statistical Modeling of Animal Movements |
| smart |
Sparse Multivariate Analysis via Rank Transformation |
| SmarterPoland |
Tools for Accessing Various Datasets Developed by the Foundation SmarterPoland.pl |
| smatr |
(Standardised) Major Axis Estimation and Testing Routines |
| smbinning |
Optimal Binning for Scoring Modeling |
| SMC |
Sequential Monte Carlo (SMC) Algorithm |
| smcfcs |
Multiple Imputation of Covariates by Substantive Model Compatible Fully Conditional Specification |
| smco |
A simple Monte Carlo optimizer using adaptive coordinate sampling |
| SMCP |
Smoothed minimax concave penalization (SMCP) method for genome-wide association studies |
| SMCRM |
Data Sets for Statistical Methods in Customer Relationship Management by Kumar and Petersen (2012) |
| smcure |
Fit Semiparametric Mixture Cure Models |
| smcUtils |
Utility functions for sequential Monte Carlo |
| smdata |
Data to accompany Smithson & Merkle, 2013 |
| smdc |
Document Similarity |
| smds |
Symbolic Multidimensional Scaling |
| sme |
Smoothing-splines Mixed-effects Models |
| smerc |
Statistical Methods for Regional Counts |
| SMFI5 |
R functions and data from Chapter 5 of 'Statistical Methods for Financial Engineering' |
| smfsb |
SMfSB 2e: Stochastic Modelling for Systems Biology, second edition |
| smint |
Smooth Multivariate Interpolation for Gridded and Scattered Data |
| SMIR |
Companion to Statistical Modelling in R |
| smirnov |
Provides two taxonomic coefficients from E. S. Smirnov "Taxonomic analysis" (1969) book |
| Smisc |
Sego Miscellaneous |
| SmithWilsonYieldCurve |
Smith-Wilson Yield Curve Construction |
| SML |
Statistical Machine Learning |
| SMNCensReg |
Fitting Univariate Censored Regression Model Under the Family of Scale Mixture of Normal Distributions |
| smnet |
Smoothing for Stream Network Data |
| smoof |
Single and Multi-Objective Optimization Test Functions |
| smoother |
Functions Relating to the Smoothing of Numerical Data |
| SmoothHazard |
Fitting illness-death model for interval-censored data |
| smoothHR |
Smooth Hazard Ratio Curves Taking a Reference Value |
| smoothie |
Two-dimensional Field Smoothing |
| smoothmest |
Smoothed M-estimators for 1-dimensional location |
| smoothSurv |
Survival Regression with Smoothed Error Distribution |
| smoothtail |
Smooth Estimation of GPD Shape Parameter |
| SMPracticals |
Practicals for use with Davison (2003) Statistical Models |
| SMR |
Externally Studentized Midrange Distribution |
| sms |
Spatial Microsimulation |
| smss |
Datasets for Agresti and Finlay's "Statistical Methods for the Social Sciences" |
| SMVar |
Structural Model for variances |
| sn |
The Skew-Normal and Skew-t Distributions |
| sna |
Tools for Social Network Analysis |
| snapshot |
Gadget N-body cosmological simulation code snapshot I/O utilities |
| SNFtool |
Similarity Network Fusion |
| snht |
Standard Normal Homogeneity Test |
| snipEM |
Snipping methods for robust estimation and clustering |
| snn |
Stabilized Nearest Neighbor Classifier |
| snow |
Simple Network of Workstations |
| SnowballC |
Snowball stemmers based on the C libstemmer UTF-8 library |
| snowboot |
Bootstrap Methods for Network Inference |
| snowfall |
Easier cluster computing (based on snow) |
| snowFT |
Fault Tolerant Simple Network of Workstations |
| snpar |
Supplementary Non-parametric Statistics Methods |
| SNPassoc |
SNPs-based whole genome association studies |
| snpEnrichment |
SNPs Enrichment Analysis |
| snplist |
Tools to Create Gene Sets |
| SNPmaxsel |
Maximally selected statistics for SNP data |
| SNPMClust |
Bivariate Gaussian Genotype Clustering and Calling for Illumina Microarrays |
| snp.plotter |
snp.plotter |
| snpRF |
Random Forest for SNPs to Prevent X-chromosome SNP Importance Bias |
| snpStatsWriter |
Flexible writing of snpStats objects to flat files |
| SNPtools |
Accessing, subsetting and plotting mouse SNPs |
| sns |
Stochastic Newton Sampler (SNS) |
| SNscan |
Scan Statistics in Social Networks |
| SNSequate |
Standard and Nonstandard Statistical Models and Methods for Test Equating |
| SOAR |
Memory management in R by delayed assignments |
| soc.ca |
Specific Correspondence Analysis for the Social Sciences |
| SocialMediaLab |
Tools for Collecting Social Media Data and Generating Networks for Analysis |
| SocialMediaMineR |
A Social Media Search and Analytic Tool |
| SocialNetworks |
Generates social networks based on distance |
| SocialPosition |
Social Position Indicators Construction Toolbox |
| SOD |
SOD for multidimensional scaling |
| SoDA |
Functions and Examples for "Software for Data Analysis" |
| sodavis |
SODA: Main and Interaction Effects Selection for Discriminant Analysis and Logistic Regression |
| SODC |
Optimal Discriminant Clustering(ODC) and Sparse Optimal Discriminant Clustering(SODC) |
| sodium |
A Modern and Easy-to-Use Crypto Library |
| Sofi |
Interfaz interactiva con fines didacticos |
| softclassval |
Soft Classification Performance Measures |
| SoftClustering |
Soft Clustering Algorithms |
| softImpute |
Matrix Completion via Iterative Soft-Thresholded SVD |
| SOIL |
Sparsity Oriented Importance Learning |
| soilDB |
Soil Database Interface |
| soilphysics |
Soil Physical Analysis |
| soilprofile |
A package to consistently represent soil properties along a soil profile |
| SoilR |
Models of Soil Organic Matter Decomposition |
| soil.spec |
Soil Spectroscopy Tools and Reference Models |
| soiltexture |
Functions for Soil Texture Plot, Classification and Transformation |
| soilwater |
Implementation of Parametric Formulas for Soil Water Retention or Conductivity Curve |
| solaR |
Radiation and Photovoltaic Systems |
| solarius |
An R Interface to SOLAR |
| solarPos |
Solar Position Algorithm for Solar Radiation Applications |
| solidearthtide |
Solid Earth Tide Computation |
| SOLOMON |
Parentage analysis |
| solr |
General Purpose R Interface to Solr |
| solrium |
General Purpose R Interface to 'Solr' |
| som |
Self-Organizing Map |
| soma |
General-Purpose Optimisation With the Self-Organising Migrating Algorithm |
| SOMbrero |
SOM Bound to Realize Euclidean and Relational Outputs |
| somebm |
some Brownian motions simulation functions |
| someKfwer |
Controlling the Generalized Familywise Error Rate |
| someMTP |
Some Multiple Testing Procedures |
| sommer |
Solving Mixed Model Equations in R |
| somplot |
Visualisation of hexagonal Kohonen maps |
| sonicLength |
Estimating Abundance of Clones from DNA fragmentation data |
| soobench |
Single Objective Optimization Benchmark Functions |
| sophisthse |
Load Russian Economic Indicators from the Archive of Economic and Social Data |
| SOPIE |
Non-Parametric Estimation of the Off-Pulse Interval of a Pulsar |
| soql |
Helps Make Socrata Open Data API Calls |
| SOR |
Estimation using Sequential Offsetted Regression |
| SortableHTMLTables |
Turns a data frame into an HTML file containing a sortable table |
| sortinghat |
sortinghat |
| sorvi |
Finnish Open Government Data Toolkit |
| sos |
Search Contributed R Packages, Sort by Package |
| sos4R |
An R client for the OGC Sensor Observation Service |
| sotkanet |
Tools for Sotkanet Open Data Portal |
| sound |
A Sound Interface for R |
| soundecology |
Soundscape Ecology |
| SoundexBR |
Phonetic-Coding for Portuguese |
| SOUP |
Stochastic Ordering Using Permutations (and Pairwise Comparisons) |
| source.gist |
Read R code from a GitHub Gist |
| sourceR |
Fits a Non-Parametric Bayesian Source Attribution Model |
| sourcetools |
Tools for the Reading and Tokenization of R Code |
| SoyNAM |
Soybean Nested Association Mapping Dataset |
| sp |
Classes and Methods for Spatial Data |
| sp23design |
Design and Simulation of seamless Phase II-III Clinical Trials |
| sp500SlidingWindow |
Sliding Window Investment Analysis |
| spa |
Implements The Sequential Predictions Algorithm |
| SPA3G |
SPA3G: R package for the method of Li and Cui (2012) |
| spaa |
SPecies Association Analysis |
| space |
Sparse PArtial Correlation Estimation |
| SPACECAP |
A Program to Estimate Animal Abundance and Density using Bayesian Spatially-Explicit Capture-Recapture Models |
| spaceExt |
Extension of SPACE |
| spacejam |
Sparse conditional graph estimation with joint additive models |
| spacetime |
Classes and Methods for Spatio-Temporal Data |
| spacodiR |
Spatial and Phylogenetic Analysis of Community Diversity |
| spacom |
Spatially Weighted Context Data for Multilevel Modelling |
| spAddins |
A Set of RStudio Addins |
| SpaDES |
Develop and Run Spatially Explicit Discrete Event Simulation Models |
| spaero |
Software for Project AERO |
| spam |
SPArse Matrix |
| spaMM |
Mixed Models, Particularly Spatial GLMMs |
| spanel |
Spatial Panel Data Models |
| spanr |
Search Partition Analysis |
| SPAr |
Perform rare variants association analysis based on summation of partition approaches |
| sparc |
Semiparametric Generalized Linear Models |
| sparcl |
Perform sparse hierarchical clustering and sparse k-means clustering |
| spareserver |
Client Side Load Balancing |
| spark |
Sparklines in the 'R' Terminal |
| sparkTable |
Sparklines and Graphical Tables for TeX and HTML |
| sparktex |
Generate LaTeX sparklines in R |
| SPARQL |
SPARQL client |
| sparr |
SPAtial Relative Risk |
| sparseBC |
Sparse Biclustering of Transposable Data |
| sparsebnUtils |
Utilities for Learning Sparse Bayesian Networks |
| sparsediscrim |
Sparse and Regularized Discriminant Analysis |
| SparseFactorAnalysis |
Scaling Count and Binary Data with Sparse Factor Analysis |
| SparseGrid |
Sparse grid integration in R |
| sparseHessianFD |
Numerical Estimation of Sparse Hessians |
| sparseLDA |
Sparse Discriminant Analysis |
| SparseLearner |
Sparse Learning Algorithms Using a LASSO-Type Penalty for Coefficient Estimation and Model Prediction |
| sparseLTSEigen |
RcppEigen back end for sparse least trimmed squares regression |
| SparseM |
Sparse Linear Algebra |
| sparseMVN |
Multivariate Normal Functions for Sparse Covariance and Precision Matrices |
| sparsenet |
Fit sparse linear regression models via nonconvex optimization |
| sparsereg |
Sparse Bayesian Models for Regression, Subgroup Analysis, and Panel Data |
| sparseSEM |
Sparse-aware Maximum Likelihood for Structural Equation Models |
| sparsesvd |
Sparse Truncated Singular Value Decomposition (from 'SVDLIBC') |
| sparseSVM |
Solution Paths of Sparse Linear Support Vector Machine with Lasso or ELastic-Net Regularization |
| SparseTSCGM |
Sparse Time Series Chain Graphical Models |
| sparsevar |
A Package for Sparse VAR/VECM Estimation |
| spartan |
Simulation Parameter Analysis R Toolkit ApplicatioN: Spartan |
| spatcounts |
Spatial count regression |
| spate |
Spatio-Temporal Modeling of Large Data Using a Spectral SPDE Approach |
| spatgraphs |
Graph Edge Computations for Spatial Point Patterns |
| spatial |
Functions for Kriging and Point Pattern Analysis |
| spatialCovariance |
Computation of Spatial Covariance Matrices for Data on Rectangles |
| spatialEco |
Spatial Analysis and Modelling |
| SpatialEpi |
Methods and Data for Spatial Epidemiology |
| SpatialExtremes |
Modelling Spatial Extremes |
| spatialfil |
Application of 2D Convolution Kernel Filters to Matrices or 3D Arrays |
| spatial.gev.bma |
Hierarchical spatial generalized extreme value (GEV) modeling with Bayesian Model Averaging (BMA) |
| spatialkernel |
Nonparameteric estimation of spatial segregation in a multivariate point process |
| spatialnbda |
Performs spatial NBDA in a Bayesian context |
| SpatialNP |
Multivariate nonparametric methods based on spatial signs and ranks |
| SpatialPack |
Package for analysis of spatial data |
| SpatialPosition |
Spatial Position Models |
| spatialprobit |
Spatial Probit Models |
| spatialsegregation |
Segregation measures for multitype spatial point patterns |
| spatialTailDep |
Estimation of spatial tail dependence models |
| spatial.tools |
R functions for working with spatial data |
| SpatialTools |
Tools for Spatial Data Analysis |
| SpatialVx |
Spatial Forecast Verification |
| SpatioTemporal |
Spatio-Temporal Model Estimation |
| SpatMCA |
Regularized Spatial Maximum Covariance Analysis |
| SpatPCA |
Regularized Principal Component Analysis for Spatial Data |
| spatstat |
Spatial Point Pattern Analysis, Model-Fitting, Simulation, Tests |
| spatsurv |
Bayesian Spatial Survival Analysis with Parametric Proportional Hazards Models |
| spbabel |
Convert Spatial Data Using Tidy Tables |
| spBayes |
Univariate and Multivariate Spatial-temporal Modeling |
| spBayesSurv |
Bayesian Modeling and Analysis of Spatially Correlated Survival Data |
| spc |
Statistical Process Control – Collection of Some Useful Functions |
| spcadjust |
Functions for Calibrating Control Charts |
| SPCALDA |
A New Reduced-Rank Linear Discriminant Analysis Method |
| spcosa |
Spatial Coverage Sampling and Random Sampling from Compact Geographical Strata |
| spcov |
Sparse Estimation of a Covariance Matrix |
| spcr |
Sparse principal component regression |
| spd |
Semi Parametric Distribution |
| spdep |
Spatial Dependence: Weighting Schemes, Statistics and Models |
| spduration |
Split-Population Duration (Cure) Regression |
| spdynmod |
Spatio-Dynamic Wetland Plant Communities Model |
| spe |
Stochastic Proximity Embedding |
| speaq |
Tools for Nuclear Magnetic Resonance Spectrum Alignment and Quantitative Analysis |
| speccalt |
Alternative spectral clustering, with automatic estimation of k |
| SpecHelpers |
Spectroscopy Related Utilities |
| SPECIES |
Statistical package for species richness estimation |
| speciesgeocodeR |
Prepare Species Distributions for the Use in Phylogenetic Analyses |
| SpeciesMix |
Fit Mixtures of Archetype species |
| specificity |
Specificity of personality trait-outcome (or trait-trait) associations |
| specmine |
Metabolomics and Spectral Data Analysis and Mining |
| SpecsVerification |
Forecast Verification Routines for the SPECS FP7 Project |
| spectralGP |
Approximate Gaussian Processes Using the Fourier Basis |
| SpectralMap |
Diffusion Map and Spectral Map |
| spectral.methods |
Singular Spectrum Analysis (SSA) Tools for Time Series Analysis |
| spectrino |
Spectra Visualization, Organizer and Data Preparation |
| SPEDInstabR |
Estimation of the Relative Importance of Factors Affecting Species Distribution Based on Stability Concept |
| speedglm |
Fitting Linear and Generalized Linear Models to Large Data Sets |
| speff2trial |
Semiparametric efficient estimation for a two-sample treatment effect |
| SPEI |
Calculation of the Standardised Precipitation-Evapotranspiration Index |
| sperich |
Auxiliary Functions to Estimate Centers of Biodiversity |
| sperrorest |
Spatial Error Estimation and Variable Importance |
| spfrontier |
Spatial Stochastic Frontier Models |
| spgrass6 |
Interface Between GRASS 6+ Geographical Information System and R |
| spgs |
Statistical Patterns in Genomic Sequences |
| spgwr |
Geographically Weighted Regression |
| sphereplot |
Spherical plotting |
| SphericalCubature |
Numerical Integration over Spheres and Balls in n-Dimensions; Multivariate Polar Coordinates |
| SphericalK |
Spherical K-Function |
| SpherWave |
Spherical Wavelets and SW-based Spatially Adaptive Methods |
| sphet |
Estimation of spatial autoregressive models with and without heteroskedastic innovations |
| spi |
Compute SPI index |
| SPIAssay |
A genetic-based assay for the identification of cell lines |
| spider |
Species Identity and Evolution in R |
| spiders |
Fits Predator Preferences Model |
| SPIGA |
Compute SPI Index using the Methods Genetic Algorithm and Maximum Likelihood |
| spikeslab |
Prediction and variable selection using spike and slab regression |
| spikeSlabGAM |
Bayesian Variable Selection and Model Choice for Generalized Additive Mixed Models |
| SPIn |
Simulation-efficient Shortest Probability Intervals |
| spinyReg |
Sparse Generative Model and Its EM Algorithm |
| splancs |
Spatial and Space-Time Point Pattern Analysis |
| splitstackshape |
Stack and Reshape Datasets After Splitting Concatenated Values |
| splm |
Econometric Models for Spatial Panel Data |
| spls |
Sparse Partial Least Squares (SPLS) Regression and Classification |
| splus2R |
Supplemental S-PLUS Functionality in R |
| splusTimeDate |
Times and Dates from S-PLUS |
| splusTimeSeries |
Time Series from S-PLUS |
| spm12r |
Wrapper Functions for SPM (Statistical Parametric Mapping) Version 12 from the Wellcome Trust Centre for Neuroimaging |
| spMC |
Continuous-Lag Spatial Markov Chains |
| SPmlficmcm |
Semiparametric Maximum Likelihood Method for Interactions Gene-Environment in Case-Mother Control-Mother Designs |
| spnet |
Plotting (Social) Networks on Maps |
| spocc |
Interface to Species Occurrence Data Sources |
| spoccutils |
Utilities for Use with 'spocc' |
| SPODT |
Spatial Oblique Decision Tree |
| sporm |
Semiparametric proportional odds rate model |
| SportsAnalytics |
Infrastructure for Sports Analytics |
| SPOT |
Sequential Parameter Optimization Toolbox |
| spray |
Sparse Arrays and Multivariate Polynomials |
| SPREDA |
Statistical Package for Reliability Data Analysis |
| sprex |
Calculate Species Richness and Extrapolation Metrics |
| sprint |
Simple Parallel R INTerface |
| sprinter |
Framework for Screening Prognostic Interactions |
| sprm |
Sparse and Non-Sparse Partial Robust M Regression and Classification |
| sprsmdl |
Sparse modeling toolkit |
| SPRT |
Wald's Sequential Probability Ratio Test |
| spsann |
Optimization of Sample Configurations using Spatial Simulated Annealing |
| spsi |
Shape-Preserving Uni-Variate and Bi-Variate Spline Interpolation |
| SPSL |
Site Percolation on Square Lattice (SPSL) |
| spsmooth |
spsmooth: An Extension Package for 'mgcv' |
| spsurvey |
Spatial Survey Design and Analysis |
| spt |
Sierpinski Pedal Triangle |
| spTDyn |
Spatially Varying and Spatio-Temporal Dynamic Linear Models |
| spTest |
Nonparametric Hypothesis Tests of Isotropy and Symmetry |
| spThin |
Functions for Spatial Thinning of Species Occurrence Records for Use in Ecological Models |
| spTimer |
Spatio-Temporal Bayesian Modelling Using R |
| sptm |
SemiParametric Transformation Model Methods |
| spuRs |
Functions and Datasets for "Introduction to Scientific Programming and Simulation Using R" |
| SQDA |
Sparse Quadratic Discriminant Analysis |
| sqldf |
Perform SQL Selects on R Data Frames |
| sqliter |
Connection wrapper to SQLite databases |
| sqlutils |
Utilities for working with SQL files |
| SQN |
subset quantile normalization |
| SQUAREM |
Squared extrapolation methods for accelerating fixed-point iterations |
| squash |
Color-Based Plots for Multivariate Visualization |
| squid |
Statistical Quantification of Individual Differences |
| sra |
Selection Response Analysis |
| SRCS |
Statistical Ranking Color Scheme for Multiple Pairwise Comparisons |
| srd |
Draws Scaled Rectangle Diagrams |
| sROC |
Nonparametric Smooth ROC Curves for Continuous Data |
| SRRS |
The Stepwise Response Refinement Screener (SRRS) |
| srvyr |
'dplyr'-Like Syntax for Summary Statistics of Survey Data |
| ss3sim |
Fisheries Stock Assessment Simulation Testing with Stock Synthesis |
| ssa |
Simultaneous Signal Analysis |
| ssanv |
Sample Size Adjusted for Nonadherence or Variability of Input Parameters |
| sscor |
Robust Correlation Estimation and Testing Based on Spatial Signs |
| ssd |
Sample Size Determination (SSD) for Unordered Categorical Data |
| SSDforR |
Functions to Analyze Single System Data |
| SSDM |
Stacked Species Distribution Modelling |
| sSDR |
Tools Developed for Structured Sufficient Dimension Reduction (sSDR) |
| ssfa |
Spatial Stochastic Frontier Analysis |
| ssfit |
Fitting of parametric models using summary statistics |
| ssh.utils |
Local and remote system commands with output and error capture |
| ssize.fdr |
Sample Size Calculations for Microarray Experiments |
| ssizeRNA |
Sample Size Calculation for RNA-Seq Experimental Design |
| SSL |
Semi-Supervised Learning |
| ssmn |
Skew Scale Mixtures of Normal Distributions |
| ssmrob |
Robust estimation and inference in sample selection models |
| SSN |
Spatial Modeling on Stream Networks |
| sspline |
Smoothing Splines on the Sphere |
| sspse |
Estimating Hidden Population Size using Respondent Driven Sampling Data |
| SSrat |
Two-dimensional sociometric status determination with rating scales |
| SSRMST |
Sample Size Calculation using Restricted Mean Survival Time |
| sss |
Tools for Importing Files in the Triple-s (Standard Survey Structure) Format |
| SSsimple |
State space models |
| ssvd |
Sparse SVD |
| ssym |
Fitting Semi-Parametric log-Symmetric Regression Models |
| st |
Shrinkage t Statistic and Correlation-Adjusted t-Score |
| stabledist |
Stable Distribution Functions |
| StableEstim |
Estimate the Four Parameters of Stable Laws using Different Methods |
| stablespec |
Stable Specification Search in Structural Equation Models |
| stabs |
Stability Selection with Error Control |
| Stack |
Stylized concatenation of data.frames or ffdfs |
| stackoverflow |
Stack Overflow's Greatest Hits |
| stacomirtools |
stacomi ODBC connection class |
| stagePop |
Modelling the Population Dynamics of a Stage-Structured Species in Continuous Time |
| stam |
Spatio-Temporal Analysis and Modelling |
| StAMPP |
Statistical Analysis of Mixed Ploidy Populations |
| STAND |
Statistical Analysis of Non-Detects |
| StandardizeText |
Standardize Text |
| StanHeaders |
C++ Header Files for Stan |
| STAR |
Spike Train Analysis with R |
| stargazer |
Well-Formatted Regression and Summary Statistics Tables |
| starma |
Modelling Space Time AutoRegressive Moving Average (STARMA) Processes |
| startupmsg |
Utilities for Start-Up Messages |
| stashR |
A Set of Tools for Administering SHared Repositories |
| Stat2Data |
Datasets for Stat2 |
| statar |
Tools Inspired by 'Stata' to Manipulate Tabular Data |
| statcheck |
Extract Statistics from Articles and Recompute P Values |
| StatDA |
Statistical Analysis for Environmental Data |
| StatDataML |
Read and Write StatDataML Files |
| statebins |
U.S. State Cartogram Heatmaps in R; an Alternative to Choropleth Maps for USA States |
| statfi |
statfi R tools |
| stationaRy |
Get Hourly Meteorological Data from Global Stations |
| StatMatch |
Statistical Matching |
| StatMeasures |
Easy Data Manipulation, Data Quality and Statistical Checks |
| StatMethRank |
Statistical Methods for Ranking Data |
| statmod |
Statistical Modeling |
| statnet |
Software Tools for the Statistical Analysis of Network Data |
| statnet.common |
Common R Scripts and Utilities Used by the Statnet Project Software |
| statnetWeb |
A Graphical User Interface for Network Modeling with 'Statnet' |
| Statomica |
Statomica utility package |
| staTools |
Statistical Tools for Social Network Analysis |
| StatRank |
Statistical Rank Aggregation: Inference, Evaluation, and Visualization |
| statTarget |
Statistical Analysis of Metabolite Profile |
| STB |
Simultaneous Tolerance Bounds |
| stcov |
Stein's Covariance Estimator |
| stddiff |
Calculate the Standardized Difference for Numeric, Binary and Category Variables |
| stdReg |
Regression Standardization |
| steadyICA |
ICA and Tests of Independence via Multivariate Distance Covariance |
| steepness |
Testing Steepness of Dominance Hierarchies |
| SteinIV |
Semi-Parametric Stein-Like Estimator with Instrumental Variables |
| stellaR |
stellar evolution tracks and isochrones |
| Stem |
Spatio-temporal models in R |
| STEPCAM |
ABC-SMC Inference of STEPCAM |
| stepp |
Subpopulation Treatment Effect Pattern Plot (STEPP) |
| stepPlr |
L2 penalized logistic regression with a stepwise variable selection |
| stepR |
Fitting Step-Functions |
| stepwise |
Stepwise detection of recombination breakpoints |
| StereoMorph |
Stereo Camera Calibration and Reconstruction |
| stheoreme |
Klimontovich's S-Theorem Algorithm Implementation and Data Preparation Tools |
| STI |
Calculation of the Standardized Temperature Index |
| stilt |
Separable Gaussian Process Interpolation (Emulation) |
| stima |
Simultaneous Threshold Interaction Modeling Algorithm |
| stinepack |
Stineman, a consistently well behaved method of interpolation |
| stlplus |
Enhanced Seasonal Decomposition of Time Series by Loess |
| stm |
Estimation of the Structural Topic Model |
| stmBrowser |
Structural Topic Model Browser |
| stmCorrViz |
A Tool for Structural Topic Model Visualizations |
| STMedianPolish |
Spatio-Temporal Median Polish |
| StMoMo |
Stochastic Mortality Modelling |
| StMoSim |
Plots a QQ-Norm Plot with several Gaussian simulations |
| stocc |
Fit a Spatial Occupancy Model via Gibbs Sampling |
| stochprofML |
Stochastic Profiling using Maximum Likelihood Estimation |
| stochvol |
Efficient Bayesian Inference for Stochastic Volatility (SV) Models |
| StockChina |
Real-Time Stock Price & Volume in China Market |
| stockPortfolio |
Build stock models and analyze stock portfolios |
| stocks |
Fast Functions for Stock Market Analysis |
| stoichcalc |
R Functions for Solving Stoichiometric Equations |
| Storm |
Write Storm Bolts in R using the Storm Multi-Language Protocol |
| storr |
Simple Key Value Stores |
| stosim |
Stochastic Simulator for Reliability Modeling of Repairable Systems |
| STPGA |
Selection of Training Populations by Genetic Algorithm |
| stplanr |
Sustainable Transport Planning |
| stpm |
Stochastic Process Model for Analysis of Longitudinal and Time-to-Event Outcomes |
| stpp |
Space-Time Point Pattern simulation, visualisation and analysis |
| stppResid |
Perform residual analysis on space-time point process models |
| StrainRanking |
Ranking of pathogen strains |
| strap |
Stratigraphic Tree Analysis for Palaeontology |
| strataG |
Summaries and Population Structure Analyses of Genetic Data |
| stratification |
Univariate Stratification of Survey Populations |
| StratifiedBalancing |
Performs Stratified Covariate Balancing for Data with Discrete and Continuous Outcome Variables |
| stratigraph |
Toolkit for the plotting and analysis of stratigraphic and palaeontological data |
| StratSel |
Strategic Selection Estimator |
| straweib |
Stratified Weibull Regression Model |
| stream |
Infrastructure for Data Stream Mining |
| StreamMetabolism |
Calculate Single Station Metabolism from Diurnal Oxygen Curves |
| streamMOA |
Interface for MOA Stream Clustering Algorithms |
| streamR |
Access to Twitter Streaming API via R |
| stremo |
Functions to help the process of learning structural equation modelling |
| stressr |
Fetch and plot financial stress index and component data |
| StressStrength |
Computation and Estimation of Reliability of Stress-Strength Models |
| stringdist |
Approximate String Matching and String Distance Functions |
| stringgaussnet |
PPI and Gaussian Network Construction from Transcriptomic Analysis Results Integrating a Multilevel Factor |
| stringi |
Character String Processing Facilities |
| stringr |
Simple, Consistent Wrappers for Common String Operations |
| stripless |
Structured Trellis Displays Without Strips for Lattice Graphics |
| StroupGLMM |
R Codes and Datasets for Generalized Linear Mixed Models: Modern Concepts, Methods and Applications by Walter W. Stroup |
| strucchange |
Testing, Monitoring, and Dating Structural Changes |
| structSSI |
Multiple Testing for Hypotheses with Hierarchical or Group Structure |
| strum |
STRUctural Modeling of Latent Variables for General Pedigree |
| strvalidator |
Process Control and Internal Validation of Forensic STR Kits |
| stsm |
Structural Time Series Models |
| stsm.class |
Class and Methods for Structural Time Series Models |
| stubthat |
Stubbing Framework for R |
| stylo |
Functions for a Variety of Stylometric Analyses |
| subcopem2D |
Bivariate Empirical Subcopula |
| SubCultCon |
Maximum-Likelihood Cultural Consensus Analysis with Sub-Cultures |
| subdetect |
Detect Subgroup with an Enhanced Treatment Effect |
| subgroup |
Methods for exploring treatment effect heterogeneity in subgroup analysis of clinical trials |
| SubLasso |
Gene selection using Lasso for Microarray data with user-defined genes fixed in model |
| SubpathwayGMir |
Identify Metabolic Subpathways Mediated by MicroRNAs |
| SubpathwayLNCE |
Identify Signal Subpathways Competitively Regulated by LncRNAs Based on ceRNA Theory |
| subplex |
Unconstrained Optimization using the Subplex Algorithm |
| subrank |
Computes Copula using Ranks and Subsampling |
| subscore |
SubScore Computing Functions in Classical Test Theory |
| subselect |
Selecting Variable Subsets |
| subsemble |
An Ensemble Method for Combining Subset-Specific Algorithm Fits |
| subspace |
Interface to OpenSubspace |
| subspaceMOA |
Interface to 'subspaceMOA' |
| subtype |
Cluster analysis to find molecular subtypes and their assessment |
| SubVis |
Visual Exploration of Protein Alignments Resulting from Multiple Substitution Matrices |
| sudoku |
Sudoku Puzzle Generator and Solver |
| sudokuAlt |
Tools for Making and Spoiling Sudoku Games |
| SUE |
Subsampling method |
| summarytools |
Dataframe Summaries, Frequency Tables and Numerical Summaries with Customizable Output |
| Sunder |
Quantification of the effect of geographic versus environmental isolation on genetic differentiation |
| SunterSampling |
Sunter's sampling design |
| supclust |
Supervised Clustering of Predictor Variables such as Genes |
| supcluster |
Supervised Cluster Analysis |
| superbiclust |
Generating Robust Biclusters from a Bicluster Set (Ensemble Biclustering) |
| superdiag |
R Code for Testing Markov Chain Nonconvergence |
| SuperExactTest |
Exact Test and Visualization of Multi-Set Intersections |
| SuperLearner |
Super Learner Prediction |
| superMDS |
Implements the supervised multidimensional scaling (superMDS) proposal of Witten and Tibshirani (2011) |
| superpc |
Supervised principal components |
| SuperRanker |
Sequential Rank Agreement |
| SuppDists |
Supplementary Distributions |
| support.BWS |
Basic Functions for Supporting an Implementation of Best-Worst Scaling |
| support.CEs |
Basic Functions for Supporting an Implementation of Choice Experiments |
| supportInt |
Calculates Likelihood Support Intervals for Common Data Types |
| surface |
Fitting Hansen Models to Investigate Convergent Evolution |
| Surrogate |
Evaluation of Surrogate Endpoints in Clinical Trials |
| suRtex |
LaTeX descriptive statistic reporting for survey data |
| surv2sampleComp |
Inference for model-free between-group parameters for censored survival data |
| survAccuracyMeasures |
Estimate accuracy measures for risk prediction markers from survival data |
| survAUC |
Estimators of prediction accuracy for time-to-event data |
| survC1 |
C-statistics for risk prediction models with censored survival data |
| SurvCorr |
Correlation of Bivariate Survival Times |
| surveillance |
Temporal and Spatio-Temporal Modeling and Monitoring of Epidemic Phenomena |
| survexp.fr |
Relative survival, AER and SMR based on French death rates |
| survey |
analysis of complex survey samples |
| surveybootstrap |
Tools for the Bootstrap with Survey Data |
| surveydata |
Tools to manipulate survey data |
| surveyeditor |
Generate a Survey that can be Completed by Survey Respondents |
| surveyoutliers |
Helps Manage Outliers in Sample Surveys |
| surveyplanning |
Survey Planning Tools |
| Survgini |
The Gini concentration test for survival data |
| survIDINRI |
IDI and NRI for comparing competing risk prediction models with censored survival data |
| survival |
Survival Analysis |
| survivalMPL |
Penalised Maximum Likelihood for Survival Analysis Models |
| survivalROC |
Time-dependent ROC curve estimation from censored survival data |
| survJamda |
Survival Prediction by Joint Analysis of Microarray Gene Expression Data |
| survJamda.data |
Data for Package 'survJambda' |
| SurvLong |
Analysis of Proportional Hazards Model with Sparse Longitudinal Covariates |
| survminer |
Drawing Survival Curves using 'ggplot2' |
| survMisc |
Miscellaneous Functions for Survival Data |
| survPresmooth |
Presmoothed Estimation in Survival Analysis |
| SurvRank |
Rank Based Survival Modelling |
| survrec |
Survival analysis for recurrent event data |
| SurvRegCensCov |
Weibull Regression for a Right-Censored Endpoint with Interval-Censored Covariate |
| survRM2 |
Comparing Restricted Mean Survival Time |
| survsim |
Simulation of Simple and Complex Survival Data |
| survSNP |
Power Calculations for SNP Studies with Censored Outcomes |
| sValues |
Measures of the Sturdiness of Regression Coefficients |
| svapls |
Surrogate variable analysis using partial least squares in a gene expression study |
| svcm |
2d and 3d Space-Varying Coefficient Models |
| svd |
Interfaces to Various State-of-Art SVD and Eigensolvers |
| svDialogs |
SciViews GUI API - Dialog boxes |
| svDialogstcltk |
SciViews GUI API - Dialog boxes using Tcl/Tk |
| svdvis |
Singular Value Decomposition Visualization |
| svdvisual |
SVD visualization tools |
| svglite |
An 'SVG' Graphics Device |
| svgPanZoom |
R 'Htmlwidget' to Add Pan and Zoom to Almost any R Graphic |
| svGUI |
SciViews GUI API - Functions to manage GUIs |
| svgViewR |
3D Animated Interactive Visualizations Using SVG |
| svHttp |
SciViews GUI API - R HTTP server |
| svIDE |
SciViews GUI API - IDE and code editor functions |
| svKomodo |
SciViews GUI API - Functions to interface with Komodo Edit/IDE |
| svmadmm |
Linear/Nonlinear SVM Classification Solver Based on ADMM and IADMM Algorithms |
| svMisc |
SciViews GUI API - Miscellaneous functions |
| SVMMaj |
SVMMaj algorithm |
| SVMMatch |
Causal Effect Estimation and Diagnostics with Support Vector Machines |
| svmpath |
svmpath: the SVM Path algorithm |
| svs |
Tools for Semantic Vector Spaces |
| svSocket |
SciViews GUI API - R Socket Server |
| svSweave |
SciViews GUI API - Sweave functions |
| svTools |
SciViews GUI API - Tools (wrapper for packages tools and codetools) |
| svUnit |
SciViews GUI API - Unit testing |
| svWidgets |
SciViews GUI API - Widgets & Windows |
| SvyNom |
Nomograms for Right-Censored Outcomes from Survey Designs |
| svyPVpack |
A package for complex surveys including plausible values |
| swamp |
Visualization, analysis and adjustment of high-dimensional data in respect to sample annotations |
| SwarmSVM |
Ensemble Learning Algorithms Based on Support Vector Machines |
| SWATmodel |
A multi-OS implementation of the TAMU SWAT model |
| SweaveListingUtils |
Utilities for Sweave Together with TeX 'listings' Package |
| sweidnumbr |
Handling of Swedish Identity Numbers |
| swfscMisc |
Miscellaneous Functions for Southwest Fisheries Science Center |
| swirl |
Learn R, in R |
| swirlify |
A Toolbox for Writing 'swirl' Courses |
| SwissAir |
Air Quality Data of Switzerland for one year in 30 min Resolution |
| switchnpreg |
Switching nonparametric regression models for a single curve and functional data |
| switchr |
Installing, Managing, and Switching Between Distinct Sets of Installed Packages |
| switchrGist |
Publish Package Manifests to GitHub Gists |
| SWMPr |
Retrieving, Organizing, and Analyzing Estuary Monitoring Data |
| sybil |
Efficient Constrained Based Modelling in R |
| sybilccFBA |
Cost Constrained FLux Balance Analysis: MetabOlic Modeling with ENzyme kineTics (MOMENT) |
| sybilcycleFreeFlux |
Cycle-Free Flux Balance Analysis |
| sybilDynFBA |
Dynamic FBA : Dynamic Flux Balance Analysis |
| sybilEFBA |
Using Gene Expression Data to Improve Flux Balance Analysis Predictions |
| sybilSBML |
SBML Integration in Package 'Sybil' |
| symbolicDA |
Analysis of Symbolic Data |
| symbols |
Symbol plots |
| symmoments |
Symbolic central and noncentral moments of the multivariate normal distribution |
| synbreed |
Framework for the Analysis of Genomic Prediction Data using R |
| synbreedData |
Data for the Synbreed Package |
| synchronicity |
Boost Mutex Functionality in R |
| synchrony |
Methods for computing spatial, temporal, and spatiotemporal statistics |
| SynchWave |
Synchrosqueezed Wavelet Transform |
| SyncMove |
Subsample Temporal Data to Synchronal Events and Compute the MCI |
| SYNCSA |
SYNCSA - Analysis of functional and phylogenetic patterns in metacommunities |
| SynergizeR |
Interface to The Synergizer service for translating between sets of biological identifiers |
| synergyfinder |
Calculate and Visualize Synergy Scores for Drug Combinations |
| SyNet |
Inference and Analysis of Sympatry Networks |
| synlik |
Synthetic Likelihood methods for intractable likelihoods |
| synRNASeqNet |
Synthetic RNA-Seq Network Generation and Mutual Information Estimates |
| Synth |
Synthetic Control Group Method for Comparative Case Studies |
| synthACS |
Synthetic Microdata and Spatial MicroSimulation Modeling for ACS Data |
| synthpop |
Generating Synthetic Versions of Sensitive Microdata for Statistical Disclosure Control |
| sysfonts |
Loading System Fonts into R |
| systemfit |
Estimating Systems of Simultaneous Equations |
| systemicrisk |
A Toolbox for Systemic Risk |
| syuzhet |
Extracts Sentiment and Sentiment-Derived Plot Arcs from Text |