| c060 |
Extended Inference for Lasso and Elastic-Net Regularized Cox and Generalized Linear Models |
| c3net |
Infering large-scale gene networks with C3NET |
| C50 |
C5.0 Decision Trees and Rule-Based Models |
| ca |
Simple, Multiple and Joint Correspondence Analysis |
| cabootcrs |
Bootstrap Confidence Regions for Correspondence Analysis |
| cacIRT |
Classification Accuracy and Consistency under Item Response Theory |
| CaDENCE |
Conditional Density Estimation Network Construction and Evaluation |
| CADFtest |
This package performs the CADF unit root test proposed in Hansen (1995) |
| cAIC4 |
Conditional Akaike information criterion for lme4 |
| Cairo |
R graphics device using cairo graphics library for creating high-quality bitmap (PNG, JPEG, TIFF), vector (PDF, SVG, PostScript) and display (X11 and Win32) output |
| cairoDevice |
Embeddable Cairo Graphics Device Driver |
| calACS |
Calculations for All Common Subsequences |
| Calculator.LR.FNs |
Calculator for LR Fuzzy Numbers |
| CALF |
Coarse Approximation Linear Function |
| CALIBERrfimpute |
Multiple imputation using MICE and Random Forest |
| calibrar |
Automated Parameter Estimation for Complex (Ecological) Models |
| calibrate |
Calibration of Scatterplot and Biplot Axes |
| CalibrateSSB |
Weighting and Estimation for Panel Data with Non-Response |
| calibrator |
Bayesian calibration of complex computer codes |
| callr |
Call R from R |
| calmate |
Improved Allele-Specific Copy Number of SNP Microarrays for Downstream Segmentation |
| CAM |
Causal Additive Model (CAM) |
| CAMAN |
Finite Mixture Models and Meta-Analysis Tools - Based on C.A.MAN |
| camel |
Calibrated Machine Learning |
| camtrapR |
Camera Trap Data Management and Preparation of Occupancy and Spatial Capture-Recapture Analyses |
| cancerGI |
Analyses of Cancer Gene Interaction |
| cancerTiming |
Estimation of Temporal Ordering of Cancer Abnormalities |
| candisc |
Visualizing Generalized Canonical Discriminant and Canonical Correlation Analysis |
| Canopy |
Accessing Intra-Tumor Heterogeneity and Tracking Longitudinal and Spatial Clonal Evolutionary History by Next-Generation Sequencing |
| CANSIM2R |
Directly Extracts Complete CANSIM Data Tables |
| cape |
Combined Analysis of Pleiotropy and Epistasis |
| caper |
Comparative Analyses of Phylogenetics and Evolution in R |
| capm |
Companion Animal Population Management |
| captioner |
Numbers Figures and Creates Simple Captions |
| captr |
Client for the Captricity API |
| capushe |
CAlibrating Penalities Using Slope HEuristics |
| capwire |
Estimates population size from non-invasive sampling |
| car |
Companion to Applied Regression |
| CARBayes |
Spatial Generalised Linear Mixed Models for Areal Unit Data |
| CARBayesdata |
Data Used in the Vignettes Accompanying the CARBayes and CARBayesST Packages |
| CARBayesST |
Spatio-Temporal Generalised Linear Mixed Models for Areal Unit Data |
| carcass |
Estimation of the Number of Fatalities from Carcass Searches |
| cardidates |
Identification of Cardinal Dates in Ecological Time Series |
| cardioModel |
Cardiovascular Safety Exposure-Response Modeling in Early-Phase Clinical Studies |
| care |
High-Dimensional Regression and CAR Score Variable Selection |
| CARE1 |
Statistical package for population size estimation in capture-recapture models |
| caret |
Classification and Regression Training |
| caretEnsemble |
Ensembles of Caret Models |
| caribou |
Estimation of caribou abundance based on large scale aggregations monitored by radio telemetry |
| CarletonStats |
Functions for Statistics Classes at Carleton College |
| CARLIT |
Ecological Quality Ratios Calculation and Plot |
| caroline |
A Collection of Database, Data Structure, Visualization, and Utility Functions for R |
| caRpools |
CRISPR AnalyzeR for Pooled CRISPR Screens |
| CARrampsOcl |
Reparameterized and marginalized posterior sampling for conditional autoregressive models, OpenCL implementation |
| cartography |
Thematic Cartography |
| carx |
Censored Autoregressive Model with Exogenous Covariates |
| caschrono |
Séries temporelles avec R - Méthodes et cas |
| caseMatch |
Identify Similar Cases for Qualitative Case Studies |
| cat |
Analysis of categorical-variable datasets with missing values |
| catdap |
Categorical Data Analysis Program Package |
| catdata |
Categorical Data |
| CatDyn |
Fishery Stock Assessment by Generalized Depletion Models |
| cate |
High Dimensional Factor Analysis and Confounder Adjusted Testing and Estimation |
| catenary |
Fits a Catenary to Given Points |
| CateSelection |
Categorical Variable Selection Methods |
| cati |
Community Assembly by Traits: Individuals and Beyond |
| catIrt |
An R Package for Simulating IRT-Based Computerized Adaptive Tests |
| catnet |
Categorical Bayesian Network Inference |
| caTools |
Tools: moving window statistics, GIF, Base64, ROC AUC, etc |
| catR |
Procedures to Generate Patterns under Computerized Adaptive Testing |
| catspec |
Special models for categorical variables |
| causaldrf |
Tools for Estimating Causal Dose Response Functions |
| causaleffect |
Deriving Expressions of Joint Interventional Distributions and Transport Formulas in Causal Models |
| CausalFX |
Methods for Estimating Causal Effects from Observational Data |
| CausalGAM |
Estimation of Causal Effects with Generalized Additive Models |
| causalsens |
Selection Bias Approach to Sensitivity Analysis for Causal Effects |
| Causata |
Analysis utilities for binary classification and Causata users |
| CAvariants |
Correspondence Analysis Variants |
| cba |
Clustering for Business Analytics |
| CBPS |
Covariate Balancing Propensity Score |
| cbsodataR |
Statistics Netherlands (CBS) Open Data API Client |
| CCA |
Canonical correlation analysis |
| CCAGFA |
Bayesian Canonical Correlation Analysis and Group Factor Analysis |
| ccaPP |
(Robust) Canonical Correlation Analysis via Projection Pursuit |
| cccd |
Class Cover Catch Digraphs |
| ccChooser |
Developing a core collections |
| cccp |
Cone Constrained Convex Problems |
| cccrm |
Concordance Correlation Coefficient for Repeated (and Non-Repeated) Measures |
| ccda |
Combined Cluster and Discriminant Analysis |
| ccgarch |
Conditional Correlation GARCH models |
| cchs |
Cox Model for Case-Cohort Data with Stratified Subcohort-Selection |
| cclust |
Convex Clustering Methods and Clustering Indexes |
| CCM |
Correlation classification method (CCM) |
| CCMnet |
Simulate Congruence Class Model for Networks |
| CCP |
Significance Tests for Canonical Correlation Analysis (CCA) |
| CCpop |
One and two locus GWAS of binary phenotype with case-control-population design |
| CCTpack |
Cultural Consensus Theory applications to data |
| cda |
Coupled dipole approximation of light scattering by clusters of nanoparticles |
| cdb |
Reading and Writing Constant DataBases |
| cdcfluview |
Retrieve U.S. Flu Season Data from the CDC FluView Portal |
| cdcsis |
Conditional Distance Correlation and Its Related Feature Screening Method |
| cdfquantreg |
Quantile Regression for Random Variables on the Unit Interval |
| CDFt |
Statistical downscaling through CDF-transform |
| CDLasso |
Coordinate Descent Algorithms for Lasso Penalized L1, L2, and Logistic Regression |
| CDM |
Cognitive Diagnosis Modeling |
| CDNmoney |
Components of Canadian Monetary and Credit Aggregates |
| cdom |
R Functions to Model CDOM Spectra |
| CDROM |
Phylogenetically Classifies Retention Mechanisms of Duplicate Genes from Gene Expression Data |
| cds |
Constrained Dual Scaling for Detecting Response Styles |
| CDVine |
Statistical Inference of C- And D-Vine Copulas |
| CEC |
Cross-Entropy Clustering |
| cec2005benchmark |
Benchmark for the CEC 2005 Special Session on Real-Parameter Optimization |
| cec2013 |
Benchmark functions for the Special Session and Competition on Real-Parameter Single Objective Optimization at CEC-2013 |
| CEGO |
Combinatorial Efficient Global Optimization |
| celestial |
Collection of Common Astronomical Conversion Routines and Functions |
| cellranger |
Translate Spreadsheet Cell Ranges to Rows and Columns |
| CellularAutomaton |
One-Dimensional Cellular Automata |
| cellVolumeDist |
Functions to fit cell volume distributions and thereby estimate cell growth rates and division times |
| cem |
Coarsened Exact Matching |
| cems |
Conditional Expectation Manifolds |
| CensMixReg |
Censored Linear Mixture Regression Models |
| censNID |
censored NID samples |
| censorcopula |
Estimate Parameter of Bivariate Copula |
| censReg |
Censored Regression (Tobit) Models |
| CensRegMod |
Fits Normal and Student-t Censored Regression Model |
| censusr |
Collect Data from the Census API |
| cents |
Censored time series |
| CEoptim |
Cross-Entropy R Package for Optimization |
| CePa |
Centrality-based pathway enrichment |
| CepLDA |
Discriminant Analysis of Time Series in the Presence of Within-Group Spectral Variability |
| cepp |
Context Driven Exploratory Projection Pursuit |
| CerioliOutlierDetection |
Outlier Detection Using the Iterated RMCD Method of Cerioli (2010) |
| cernn |
Covariance Estimation Regularized by Nuclear Norm Penalties |
| CFC |
Cause-Specific Framework for Competing-Risk Analysis |
| CfEstimateQuantiles |
Estimate quantiles using any order Cornish-Fisher expansion |
| cffdrs |
Canadian Forest Fire Danger Rating System |
| cg |
Compare Groups, Analytically and Graphically |
| cgam |
Constrained Generalized Additive Model |
| cgAUC |
Calculate AUC-type measure when gold standard is continuous and the corresponding optimal linear combination of variables with respect to it |
| cgdsr |
R-Based API for Accessing the MSKCC Cancer Genomics Data Server (CGDS) |
| cggd |
Continuous Generalized Gradient Descent |
| cgh |
Microarray CGH analysis using the Smith-Waterman algorithm |
| cghFLasso |
Detecting hot spot on CGH array data with fused lasso regression |
| cghseg |
Segmentation Methods for Array CGH Analysis |
| CGP |
Composite Gaussian process models |
| cgwtools |
Miscellaneous Tools |
| ChainLadder |
Statistical Methods and Models for Claims Reserving in General Insurance |
| changepoint |
Methods for Changepoint Detection |
| changepoint.np |
Methods for Nonparametric Changepoint Detection |
| ChangepointTesting |
Change Point Estimation for Clustered Signals |
| ChannelAttribution |
Markov Model for the Online Multi-Channel Attribution Problem |
| ChannelAttributionApp |
Shiny Web Application for the Multichannel Attribution Problem |
| Chaos01 |
0-1 Test for Chaos |
| ChaosGame |
Chaos Game |
| ChargeTransport |
Charge Transfer Rates and Charge Carrier Mobilities |
| CHAT |
Clonal Heterogeneity Analysis Tool |
| CHCN |
Canadian Historical Climate Network |
| cheb |
Discrete Linear Chebyshev Approximation |
| chebpol |
Multivariate Chebyshev Interpolation |
| CheckDigit |
Calculate and verify check digits |
| checkmate |
Fast and Versatile Argument Checks |
| checkpoint |
Install Packages from Snapshots on the Checkpoint Server for Reproducibility |
| cheddar |
Analysis and Visualisation of Ecological Communities |
| chemCal |
Calibration Functions for Analytical Chemistry |
| chemometrics |
Multivariate Statistical Analysis in Chemometrics |
| ChemometricsWithR |
Chemometrics with R - Multivariate Data Analysis in the Natural Sciences and Life Sciences |
| ChemometricsWithRData |
Data for package ChemometricsWithR |
| ChemoSpec |
Exploratory Chemometrics for Spectroscopy |
| cherry |
Multiple Testing Methods for Exploratory Research |
| CHFF |
Closest History Flow Field Forecasting for Bivariate Time Series |
| chi |
The Chi Distribution |
| childsds |
Calculation of standard deviation scores adduced from different growth standards |
| chillR |
Statistical Methods for Phenology Analysis in Temperate Fruit Trees |
| chipPCR |
Toolkit of Helper Functions to Pre-Process Amplification Data |
| ChIPtest |
Nonparametric Methods for Identifying Differential Enrichment Regions with ChIP-Seq Data |
| chngpt |
Change Point Regression |
| CHNOSZ |
Chemical Thermodynamics and Activity Diagrams |
| choiceDes |
Design Functions for Choice Studies |
| ChoiceModelR |
Choice Modeling in R |
| choplump |
Choplump tests |
| chopthin |
The Chopthin Resampler |
| chords |
Estimation in respondent driven samples |
| choroplethr |
Simplify the Creation of Choropleth Maps in R |
| choroplethrAdmin1 |
Contains an Administrative-Level-1 Map of the World |
| choroplethrMaps |
Contains maps used by the choroplethr package |
| chromer |
Interface to Chromosome Counts Database API |
| chromoR |
Analysis of chromosomal interactions data (correction, segmentation and comparison) |
| chron |
Chronological Objects which can Handle Dates and Times |
| CHsharp |
Choi and Hall Style Data Sharpening |
| chunked |
Chunkwise Text-File Processing for 'dplyr' |
| CIDnetworks |
Generative Models for Complex Networks with Conditionally Independent Dyadic Structure |
| CIFsmry |
Weighted summary of cumulative incidence functions |
| cin |
Causal Inference for Neuroscience |
| CINID |
Curculionidae INstar IDentification |
| CINOEDV |
Co-Information based N-Order Epistasis Detector and Visualizer |
| CircE |
Circumplex models Estimation |
| circlize |
Circular Visualization |
| CircNNTSR |
Statistical Analysis of Circular Data using Nonnegative Trigonometric Sums (NNTS) Models |
| CircOutlier |
Detection of Outliers in Circular-Circular Regression |
| CircStats |
Circular Statistics, from "Topics in circular Statistics" (2001) |
| circular |
Circular Statistics |
| cIRT |
Choice Item Response Theory |
| cit |
Causal Inference Test |
| CITAN |
CITation ANalysis Toolpack |
| citbcmst |
CIT Breast Cancer Molecular SubTypes Prediction |
| citccmst |
CIT Colon Cancer Molecular SubTypes Prediction |
| Cite |
An RStudio Addin to Insert BibTex Citation in Rmarkdown Documents |
| CityPlot |
Visualization of structure and contents of a database |
| cjoint |
AMCE Estimator for Conjoint Experiments |
| ckanr |
Client for the Comprehensive Knowledge Archive Network ('CKAN') 'API' |
| Ckmeans.1d.dp |
Optimal and Fast Univariate k-Means Clustering |
| cladoRcpp |
C++ implementations of phylogenetic cladogenesis calculations |
| ClamR |
Time Series Modeling for Climate Change Proxies |
| clarifai |
Access to Clarifai API |
| class |
Functions for Classification |
| classGraph |
Construct Graphs of S4 Class Hierarchies |
| classifly |
Explore classification models in high dimensions |
| classify |
Classification Accuracy and Consistency under IRT models |
| classInt |
Choose Univariate Class Intervals |
| classyfire |
Robust multivariate classification using highly optimised SVM ensembles |
| cleangeo |
Cleaning Geometries from Spatial Objects |
| clere |
Simultaneous Variables Clustering and Regression |
| clhs |
Conditioned Latin Hypercube Sampling |
| ClickClust |
Model-Based Clustering of Categorical Sequences |
| clickstream |
Analyzes Clickstreams Based on Markov Chains |
| clifro |
Easily Download and Visualise Climate Data from CliFlo |
| clikcorr |
Censoring Data and Likelihood-Based Correlation Estimation |
| ClimClass |
Climate Classification According to Several Indices |
| climdex.pcic |
PCIC Implementation of Climdex Routines |
| clime |
Constrained L1-minimization for Inverse (covariance) Matrix Estimation |
| climtrends |
Statistical Methods for Climate Sciences |
| climwin |
Climate Window Analysis |
| clinfun |
Clinical Trial Design and Data Analysis Functions |
| clinsig |
Clinical Significance Functions |
| clinUtiDNA |
Clinical Utility of DNA Testing |
| clipr |
Read and Write from the System Clipboard |
| clisymbols |
Unicode Symbols at the R Prompt |
| CLME |
Constrained Inference for Linear Mixed Effects Models |
| clogitboost |
Boosting Conditional Logit Model |
| clogitL1 |
Fitting exact conditional logistic regression with lasso and elastic net penalties |
| cloudUtil |
Cloud Utilization Plots |
| clpAPI |
R Interface to C API of COIN-OR Clp |
| CLSOCP |
A smoothing Newton method SOCP solver |
| clttools |
Central Limit Theorem Experiments (Theoretical and Simulation) |
| clubSandwich |
Cluster-Robust (Sandwich) Variance Estimators with Small-Sample Corrections |
| clue |
Cluster Ensembles |
| ClueR |
CLUster Evaluation (CLUE) |
| clues |
Clustering Method Based on Local Shrinking |
| CluMix |
Clustering and Visualization of Mixed-Type Data |
| clusrank |
Wilcoxon Rank Sum Test for Clustered Data |
| cluster |
"Finding Groups in Data": Cluster Analysis Extended Rousseeuw et al. |
| clusterCrit |
Clustering Indices |
| cluster.datasets |
Cluster Analysis Data Sets |
| ClusteredMutations |
Location and Visualization of Clustered Somatic Mutations |
| clusterfly |
Explore clustering interactively using R and GGobi |
| clusterGeneration |
Random Cluster Generation (with Specified Degree of Separation) |
| clusterGenomics |
Identifying clusters in genomics data by recursive partitioning |
| clusterhap |
Clustering Genotypes in Haplotypes |
| clustering.sc.dp |
Optimal Distance-Based Clustering for Multidimensional Data with Sequential Constraint |
| clusterPower |
Power calculations for cluster-randomized and cluster-randomized crossover trials |
| ClusterRankTest |
Rank Tests for Clustered Data |
| clusterRepro |
Reproducibility of gene expression clusters |
| clusterSEs |
Calculate Cluster-Robust p-Values and Confidence Intervals |
| clusterSim |
Searching for Optimal Clustering Procedure for a Data Set |
| ClusterStability |
Assessment of Stability of Individual Objects or Clusters in Partitioning Solutions |
| clustertend |
Check the Clustering Tendency |
| clusteval |
Evaluation of Clustering Algorithms |
| ClustGeo |
Clustering of Observations with Geographical Constraints |
| clustMD |
Model Based Clustering for Mixed Data |
| clustMixType |
k-Prototypes Clustering for Mixed Variable-Type Data |
| ClustMMDD |
Variable Selection in Clustering by Mixture Models for Discrete Data |
| ClustOfVar |
Clustering of variables |
| clustrd |
Methods for joint dimension reduction and clustering |
| clustsig |
Significant Cluster Analysis |
| ClustVarLV |
Clustering of Variables Around Latent Variables |
| clustvarsel |
Variable Selection for Model-Based Clustering |
| clv |
Cluster Validation Techniques |
| clValid |
Validation of Clustering Results |
| cmaes |
Covariance Matrix Adapting Evolutionary Strategy |
| cmaesr |
Covariance Matrix Adaptation Evolution Strategy |
| CMC |
Cronbach-Mesbah Curve |
| CMF |
Collective matrix factorization |
| cmm |
Categorical Marginal Models |
| cmna |
Computational Methods for Numerical Analysis |
| CMPControl |
Control Charts for Conway-Maxwell-Poisson Distribution |
| CMplot |
Circle Manhattan Plot |
| cmprsk |
Subdistribution Analysis of Competing Risks |
| cmprskQR |
Analysis of Competing Risks Using Quantile Regressions |
| cmrutils |
Misc Functions of the Center for the Mathematical Research |
| cmsaf |
Tools for CM SAF Netcdf Data |
| cmvnorm |
The Complex Multivariate Gaussian Distribution |
| cna |
A Package for Coincidence Analysis (CNA) |
| cncaGUI |
Canonical Non-Symmetrical Correspondence Analysis in R |
| cnmlcd |
Maximum Likelihood Estimation of a Log-Concave Density Function |
| CNOGpro |
Copy Numbers of Genes in prokaryotes |
| CNprep |
Pre-process DNA Copy Number (CN) Data for Detection of CN Events |
| CNVassoc |
Association Analysis of CNV Data and Imputed SNPs |
| CNVassocData |
Example data sets for association analysis of CNV data |
| coala |
A Framework for Coalescent Simulation |
| coalescentMCMC |
MCMC Algorithms for the Coalescent |
| coarseDataTools |
A Collection of Functions to Help with Analysis of Coarsely Observed Data |
| cobalt |
Covariate Balance Tables and Plots |
| COBRA |
Nonlinear Aggregation of Predictors |
| cobs |
COnstrained B-Splines (Sparse Matrix Based) |
| CoClust |
Copula Based Cluster Analysis |
| COCONUT |
COmbat CO-Normalization Using conTrols (COCONUT) |
| cocor |
Comparing Correlations |
| cocoreg |
Extracts Shared Variation in Collections of Datasets Using Regression Models |
| cocorresp |
Co-Correspondence Analysis Methods |
| cocron |
Statistical Comparisons of Two or more Alpha Coefficients |
| coda |
Output Analysis and Diagnostics for MCMC |
| codadiags |
Markov chain Monte Carlo burn-in based on "bridge" statistics |
| cOde |
Automated C Code Generation for Use with the 'deSolve' and 'bvpSolve' Packages |
| codep |
Multiscale Codependence Analysis |
| codetools |
Code Analysis Tools for R |
| codingMatrices |
Alternative Factor Coding Matrices for Linear Model Formulae |
| codyn |
Community Dynamics Metrics |
| coefficientalpha |
Robust Coefficient Alpha and Omega with Missing and Non-Normal Data |
| coefplot |
Plots Coefficients from Fitted Models |
| coenocliner |
Coenocline Simulation |
| coenoflex |
Gradient-Based Coenospace Vegetation Simulator |
| coexist |
Species coexistence modeling and analysis |
| cofeatureR |
Generate Cofeature Matrices |
| CoImp |
Copula based imputation method |
| coin |
Conditional Inference Procedures in a Permutation Test Framework |
| CoinMinD |
Simultaneous Confidence Interval for Multinomial Proportion |
| cointmonitoR |
Consistent Monitoring of Stationarity and Cointegrating Relationships |
| cointReg |
Parameter Estimation and Inference in a Cointegrating Regression |
| cold |
Count Longitudinal Data |
| CollapsABEL |
Generalized CDH (GCDH) Analysis |
| CollocInfer |
Collocation Inference for Dynamic Systems |
| collUtils |
Auxiliary Package for Package 'CollapsABEL' |
| coloc |
Colocalisation tests of two genetic traits |
| coloredICA |
Implementation of Colored Independent Component Analysis and Spatial Colored Independent Component Analysis |
| colorfulVennPlot |
Plot and add custom coloring to Venn diagrams for 2-dimensional, 3-dimensional and 4-dimensional data |
| colorhcplot |
Colorful Hierarchical Clustering Dendrograms |
| ColorPalette |
Color Palettes Generator |
| colorRamps |
Builds color tables |
| colorscience |
Color Science Methods and Data |
| colorspace |
Color Space Manipulation |
| colorSpec |
Color Calculations with Emphasis on Spectral Data |
| colortools |
Tools for colors in a Hue-Saturation-Value (HSV) color model |
| colourlovers |
R Client for the COLOURlovers API |
| comato |
Analysis of Concept Maps |
| COMBIA |
Synergy/Antagonism Analyses of Drug Combinations |
| combinat |
combinatorics utilities |
| Combine |
Game-Theoretic Probability Combination |
| CombinePortfolio |
Estimation of Optimal Portfolio Weights by Combining Simple Portfolio Strategies |
| CombinePValue |
Combine a Vector of Correlated p-values |
| CombinS |
Construction Methods of some Series of PBIB Designs |
| CombMSC |
Combined Model Selection Criteria |
| comclim |
Community climate statistics |
| cometExactTest |
Exact Test from the Combinations of Mutually Exclusive Alterations (CoMEt) Algorithm |
| comf |
Functions for Thermal Comfort Research |
| ComICS |
Computational Methods for Immune Cell-Type Subsets |
| commandr |
Command pattern in R |
| commentr |
Print Nicely Formatted Comments for Use in Script Files |
| CommonJavaJars |
Useful libraries for building a Java based GUI under R |
| commonmark |
Bindings to the CommonMark Reference Implementation |
| CommonTrend |
Extract and plot common trends from a cointegration system. Calculate P-value for Johansen Statistics |
| CommT |
Comparative Phylogeographic Analysis using the Community Tree Framework |
| COMMUNAL |
Robust Selection of Cluster Number K |
| CommunityCorrelogram |
Ecological Community Correlogram |
| Comp2ROC |
Compare Two ROC Curves that Intersect |
| compactr |
Creates empty plots with compact axis notation |
| compare |
Comparing Objects for Differences |
| compareC |
Compare Two Correlated C Indices with Right-censored Survival Outcome |
| CompareCausalNetworks |
Interface to Diverse Estimation Methods of Causal Networks |
| compareDF |
Do a Git Style Diff of the Rows Between Two Dataframes with Similar Structure |
| compareGroups |
Descriptive Analysis by Groups |
| compareODM |
comparison of medical forms in CDISC ODM format |
| CompareTests |
Correct for Verification Bias in Diagnostic Accuracy & Agreement |
| comparison |
Multivariate likelihood ratio calculation and evaluation |
| compeir |
Event-specific incidence rates for competing risks data |
| compendiumdb |
Tools for Retrieval and Storage of Functional Genomics Data |
| compete |
Analyzing Social Hierarchies |
| CompGLM |
Conway-Maxwell-Poisson GLM and distribution functions |
| compHclust |
Complementary Hierarchical Clustering |
| Compind |
Composite Indicators Functions |
| ComplexAnalysis |
Numerically Evaluate Integrals and Derivatives (also Higher Order) of Vector- And Complex-Valued Functions |
| complmrob |
Robust Linear Regression with Compositional Data as Covariates |
| CompLognormal |
Functions for actuarial scientists |
| compoisson |
Conway-Maxwell-Poisson Distribution |
| COMPoissonReg |
Conway-Maxwell Poisson (COM-Poisson) Regression |
| Compositional |
Compositional Data Analysis |
| compositions |
Compositional Data Analysis |
| compound.Cox |
Regression Estimation Based on the Compound Covariate Method Under the Cox Proportional Hazard Model |
| Compounding |
Computing Continuous Distributions |
| CompQuadForm |
Distribution function of quadratic forms in normal variables |
| CompR |
Paired Comparison Data Analysis |
| CompRandFld |
Composite-Likelihood Based Analysis of Random Fields |
| compute.es |
Compute Effect Sizes |
| Conake |
Continuous Associated Kernel Estimation |
| concatenate |
Human-Friendly Text from Unknown Strings |
| conclust |
Pairwise Constraints Clustering |
| ConConPiWiFun |
Optimisation with Continuous Convex Piecewise (Linear and Quadratic) Functions |
| concor |
Concordance |
| concordance |
Product Concordance |
| concreg |
Concordance regression |
| cond |
Approximate conditional inference for logistic and loglinear models |
| condformat |
Conditional Formatting in Data Frames |
| condGEE |
Parameter estimation in conditional GEE for recurrent event gap times |
| condmixt |
Conditional Density Estimation with Neural Network Conditional Mixtures |
| condMVNorm |
Conditional Multivariate Normal Distribution |
| CONDOP |
Condition-Dependent Operon Predictions |
| CondReg |
Condition Number Regularized Covariance Estimation |
| condSURV |
Estimation of the Conditional Survival Function for Ordered Multivariate Failure Time Data |
| condvis |
Conditional Visualization for Statistical Models |
| coneproj |
Primal or Dual Cone Projections with Routines for Constrained Regression |
| conf.design |
Construction of factorial designs |
| confidence |
Confidence Estimation of Environmental State Classifications |
| config |
Manage Environment Specific Configuration Values |
| conformal |
Conformal Prediction for Regression and Classification |
| confreq |
Configural Frequencies Analysis Using Log-Linear Modeling |
| conicfit |
Algorithms for Fitting Circles, Ellipses and Conics Based on the Work by Prof. Nikolai Chernov |
| conics |
Plot Conics |
| Conigrave |
Flexible Tools for Multiple Imputation |
| conjoint |
Conjoint analysis package |
| ConjointChecks |
A package to check the cancellation axioms of conjoint measurement |
| connect3 |
A Tool for Reproducible Research by Converting 'LaTeX' Files Generated by R Sweave to Rich Text Format Files |
| ConnMatTools |
Tools for working with connectivity matrices |
| conover.test |
Conover-Iman Test of Multiple Comparisons Using Rank Sums |
| ConSpline |
Partial Linear Least-Squares Regression using Constrained Splines |
| ConsRank |
Compute the Median Ranking(s) According to the Kemeny's Axiomatic Approach |
| constrainedKriging |
Constrained, Covariance-Matching Constrained and Universal Point or Block Kriging |
| ContaminatedMixt |
Model-Based Clustering and Classification with the Multivariate Contaminated Normal Distribution |
| contfrac |
Continued Fractions |
| conting |
Bayesian Analysis of Contingency Tables |
| contoureR |
Contouring of Non-Regular Three-Dimensional Data |
| contrast |
A collection of contrast methods |
| controlTest |
Median Comparison for Two-Sample Right-Censored Survival Data |
| ConvCalendar |
Converts dates between calendars |
| ConvergenceConcepts |
Seeing convergence concepts in action |
| convertGraph |
Convert Graphical Files Format |
| convevol |
Quantifies and assesses the significance of convergent evolution |
| convey |
Income Concentration Analysis with Complex Survey Samples |
| convoSPAT |
Convolution-Based Nonstationary Spatial Modeling |
| cooccur |
Probabilistic Species Co-Occurrence Analysis in R |
| coop |
Co-Operation: Fast Covariance, Correlation, and Cosine Similarity Operations |
| cooptrees |
Cooperative aspects of optimal trees in weighted graphs |
| copBasic |
General Bivariate Copula Theory and Many Utility Functions |
| copCAR |
Fitting the copCAR Regression Model for Discrete Areal Data |
| cope |
Coverage Probability Excursion (CoPE) Sets |
| copula |
Multivariate Dependence with Copulas |
| CopulaDTA |
Copula Based Bivariate Beta-Binomial Model for Diagnostic Test Accuracy Studies |
| copulaedas |
Estimation of Distribution Algorithms Based on Copulas |
| Copula.Markov |
Estimation and Statistical Process Control Under Copula-Based Time Series Models |
| CopulaRegression |
Bivariate Copula Based Regression Models |
| CopulaREMADA |
Copula Mixed Effect Models for Bivariate and Trivariate Meta-Analysis of Diagnostic Test Accuracy Studies |
| CopyDetect |
Computing Statistical Indices to Detect Answer Copying on Multiple-Choice Tests |
| CopyNumber450kCancer |
Baseline Correction for Copy Number Data from Cancer Samples |
| Corbi |
Collection of Rudimentary Bioinformatics Tools |
| corclass |
Correlational Class Analysis |
| corcounts |
Generate correlated count random variables |
| cord |
Community Estimation in G-Models via CORD |
| CORE |
Cores of Recurrent Events |
| CORElearn |
Classification, Regression and Feature Evaluation |
| coreNLP |
Wrappers Around Stanford CoreNLP Tools |
| coreSim |
Core Functionality for Simulating Quantities of Interest from Generalised Linear Models |
| coreTDT |
TDT for compound heterozygous and recessive models |
| corHMM |
Analysis of Binary Character Evolution |
| corkscrew |
Preprocessor for Data Modeling |
| CORM |
The Clustering of Regression Models Method |
| corpcor |
Efficient Estimation of Covariance and (Partial) Correlation |
| corpora |
Statistics and data sets for corpus frequency data |
| corr2D |
Implementation of 2D Correlation Analysis |
| CorrBin |
Nonparametrics with Clustered Binary and Multinomial Data |
| correctedAUC |
Correcting AUC for Measurement Error |
| CorrectOverloadedPeaks |
Correct Overloaded Peaks from GC-APCI-MS Data |
| CorReg |
Linear Regression Based on Linear Structure Between Covariates |
| corregp |
Functions and Methods for Correspondence Regression |
| Correlplot |
A collection of functions for graphing correlation matrices |
| corrgram |
Plot a Correlogram |
| CorrMixed |
Estimate Correlations Between Repeatedly Measured Endpoints (E.g., Reliability) Based on Linear Mixed-Effects Models |
| corrplot |
Visualization of a Correlation Matrix |
| corrr |
Correlations in R |
| corrsieve |
CorrSieve |
| CorrToolBox |
Modeling Correlational Magnitude Transformations in Discretization Contexts |
| corTools |
Tools for processing data after a Genome Wide Association Study |
| COSINE |
COndition SpecIfic sub-NEtwork |
| cosinor |
Tools for estimating and predicting the cosinor model |
| cosmoFns |
Functions for cosmological distances, times, luminosities, etc |
| CosmoPhotoz |
Photometric redshift estimation using generalized linear models |
| cosmosR |
cosmosR |
| cosso |
Fit Regularized Nonparametric Regression Models Using COSSO Penalty |
| costat |
Time series costationarity determination |
| CosW |
The CosW Distribution |
| cotrend |
Consistant Cotrend Rank Selection |
| couchDB |
Connect to and Work with CouchDB Databases |
| COUNT |
Functions, data and code for count data |
| Countr |
Flexible Univariate and Bivariate Count Process Probability |
| countrycode |
Convert Country Names and Country Codes |
| CountsEPPM |
Mean and Variance Modeling of Count Data |
| countytimezones |
Convert from UTC to Local Time for United States Counties |
| COUSCOus |
A Residue-Residue Contact Detecting Method |
| covafillr |
Local Polynomial Regression of State Dependent Covariates in State-Space Models |
| covBM |
Brownian Motion Processes for 'nlme'-Models |
| covLCA |
Latent Class Models with Covariate Effects on Underlying and Measured Variables |
| covmat |
Covariance Matrix Estimation |
| covr |
Test Coverage for Packages |
| covreg |
A simultaneous regression model for the mean and covariance |
| covRobust |
Robust Covariance Estimation via Nearest Neighbor Cleaning |
| CovSel |
Model-Free Covariate Selection |
| CovSelHigh |
Model-Free Covariate Selection in High Dimensions |
| covsep |
Tests for Determining if the Covariance Structure of 2-Dimensional Data is Separable |
| covTest |
Computes covariance test for adaptive linear modelling |
| cowplot |
Streamlined Plot Theme and Plot Annotations for 'ggplot2' |
| cowsay |
Messages, Warnings, Strings with Ascii Animals |
| CoxBoost |
Cox models by likelihood based boosting for a single survival endpoint or competing risks |
| coxinterval |
Cox-Type Models for Interval-Censored Data |
| coxme |
Mixed Effects Cox Models |
| Coxnet |
Regularized Cox Model |
| coxphf |
Cox regression with Firth's penalized likelihood |
| coxphw |
Weighted Estimation in Cox Regression |
| CoxPlus |
Cox Regression (Proportional Hazards Model) with Multiple Causes and Mixed Effects |
| CoxRidge |
Cox Models with Dynamic Ridge Penalties |
| coxrobust |
Robust Estimation in Cox Model |
| coxsei |
Fitting a CoxSEI Model |
| CP |
Conditional Power Calculations |
| cp4p |
Calibration Plot for Proteomics |
| cpa |
Confirmatory Path Analysis through the d-sep tests |
| cpca |
Methods to perform Common Principal Component Analysis (CPCA) |
| CPE |
Concordance Probability Estimates in Survival Analysis |
| CpGassoc |
Association Between Methylation and a Phenotype of Interest |
| cpgen |
Parallelized Genomic Prediction and GWAS |
| CpGFilter |
CpG Filtering Method Based on Intra-class Correlation Coefficients |
| CPHshape |
Find the maximum likelihood estimator of the shape constrained hazard baseline and the effect parameters in the Cox proportional hazards model |
| cpk |
Clinical Pharmacokinetics |
| cplexAPI |
R Interface to C API of IBM ILOG CPLEX |
| cplm |
Compound Poisson Linear Models |
| cpm |
Sequential and Batch Change Detection Using Parametric and Nonparametric Methods |
| CPMCGLM |
Correction of the pvalue after multiple coding |
| Cprob |
Conditional probability function of a competing event |
| cqrReg |
Quantile, Composite Quantile Regression and Regularized Versions |
| cquad |
Conditional Maximum Likelihood for Quadratic Exponential Models for Binary Panel Data |
| CR |
Power Calculation for Weighted Log-Rank Tests in Cure Rate Models |
| CRAC |
Cosmology R Analysis Code |
| crackR |
Probabilistic damage tolerance analysis for fatigue cracking of metallic aerospace structures |
| cramer |
Multivariate nonparametric Cramer-Test for the two-sample-problem |
| crandatapkgs |
Find Data-Only Packages on CRAN |
| crank |
Completing Ranks |
| cranlogs |
Download Logs from the 'RStudio' 'CRAN' Mirror |
| crantastic |
Various R tools for http://crantastic.org/ |
| crawl |
Fit Continuous-Time Correlated Random Walk Models to Animal Movement Data |
| crayon |
Colored Terminal Output |
| crblocks |
Categorical Randomized Block Data Analysis |
| crch |
Censored Regression with Conditional Heteroscedasticity |
| CreditMetrics |
Functions for calculating the CreditMetrics risk model |
| creditr |
Credit Default Swaps in R |
| credule |
Credit Default Swap Functions |
| CRF |
Conditional Random Fields |
| cricketr |
Analyze Cricketers Based on ESPN Cricinfo Statsguru |
| crimCV |
Group-Based Modelling of Longitudinal Data |
| crimelinkage |
Statistical Methods for Crime Series Linkage |
| CRM |
Continual Reassessment Method (CRM) for Phase I Clinical Trials |
| crmn |
CCMN and other noRMalizatioN methods for metabolomics data |
| crmPack |
Object-Oriented Implementation of CRM Designs |
| crn |
Downloads and Builds datasets for Climate Reference Network |
| crop |
Graphics Cropping Tool |
| CrossClustering |
A Partial Clustering Algorithm with Automatic Estimation of the Number of Clusters and Identification of Outliers |
| crossdes |
Construction of Crossover Designs |
| crossmatch |
The Cross-match Test |
| Crossover |
Analysis and Search of Crossover Designs |
| crossReg |
Confidence intervals for crossover points of two simple regression lines |
| crossval |
Generic Functions for Cross Validation |
| crp.CSFP |
CreditRisk+ Portfolio Model |
| crqa |
Cross-Recurrence Quantification Analysis for Categorical and Continuous Time-Series |
| crrp |
Penalized Variable Selection in Competing Risks Regression |
| crrSC |
Competing risks regression for Stratified and Clustered data |
| crrstep |
Stepwise Covariate Selection for the Fine & Gray Competing Risks Regression Model |
| crs |
Categorical Regression Splines |
| crskdiag |
Diagnostics for Fine and Gray Model |
| crsnls |
Nonlinear Regression Parameters Estimation by 'CRS4HC' and 'CRS4HCe' |
| crtests |
Classification and Regression Tests |
| CRTgeeDR |
Doubly Robust Inverse Probability Weighted Augmented GEE Estimator |
| CRTSize |
Sample Size Estimation Functions for Cluster Randomized Trials |
| crunch |
Crunch.io Data Tools |
| cruts |
Interface to Climatic Research Unit Time-Series Version 3.21 Data |
| CrypticIBDcheck |
Identifying cryptic relatedness in genetic association studies |
| CryptRndTest |
Statistical Tests for Cryptographic Randomness |
| csampling |
Functions for Conditional Simulation in Regression-Scale Models |
| cSFM |
Covariate-adjusted Skewed Functional Model (cSFM) |
| cshapes |
CShapes Dataset and Utilities |
| cslogistic |
Conditionally Specified Logistic Regression |
| csn |
Closed Skew-Normal Distribution |
| csp |
Correlates of State Policy Data Set in R |
| csrplus |
Methods to Test Hypotheses on the Distribution of Spatial Point Processes |
| csSAM |
csSAM - cell-specific Significance Analysis of Microarrays |
| cssTools |
Cognitive Social Structure Tools |
| cstar |
Substantive significance testing for regression estimates and marginal effects |
| csvread |
Fast Specialized CSV File Loader |
| ctmcmove |
Modeling Animal Movement with Continuous-Time Discrete-Space Markov Chains |
| ctmm |
Continuous-Time Movement Modeling |
| cts |
Continuous Time Autoregressive Models |
| ctsem |
Continuous Time Structural Equation Modelling |
| CTT |
Classical Test Theory Functions |
| CTTShiny |
Classical Test Theory via Shiny |
| ctv |
CRAN Task Views |
| CUB |
A Class of Mixture Models for Ordinal Data |
| cubature |
Adaptive multivariate integration over hypercubes |
| cubfits |
Codon Usage Bias Fits |
| Cubist |
Rule- and Instance-Based Regression Modeling |
| cudaBayesreg |
CUDA Parallel Implementation of a Bayesian Multilevel Model for fMRI Data Analysis |
| cudaBayesregData |
Data sets for the examples used in the package "cudaBayesreg" |
| cudia |
CUDIA Cross-level Imputation |
| CUFF |
Charles's Utility Function using Formula |
| CUMP |
Analyze Multivariate Phenotypes by Combining Univariate results |
| cumplyr |
Extends ddply to allow calculation of cumulative quantities |
| cumSeg |
Change point detection in genomic sequences |
| curl |
A Modern and Flexible Web Client for R |
| curlconverter |
Tools to Transform 'cURL' Command-Line Calls to 'httr' Requests |
| currentSurvival |
Estimation of CCI and CLFS Functions |
| curvetest |
The package will formally test two curves represented by discrete data sets to be statistically equal or not when the errors of the two curves were assumed either equal or not using the tube formula to calculate the tail probabilities |
| curvHDR |
Filtering of Flow Cytometry Samples |
| cusp |
Cusp-Catastrophe Model Fitting Using Maximum Likelihood |
| customizedTraining |
Customized Training for Lasso and Elastic-Net Regularized Generalized Linear Models |
| CUSUMdesign |
Compute Decision Interval and Average Run Length for CUSUM Charts |
| cutoffR |
CUTOFF: A Spatio-temporal Imputation Method |
| cuttlefish.model |
An R package to perform LPUE standardization and stock assessment of the English Channel cuttlefish stock using a two-stage biomass model |
| cvAUC |
Cross-Validated Area Under the ROC Curve Confidence Intervals |
| CVcalibration |
Estimation of the Calibration Equation with Error-in Observations |
| cvplogistic |
Penalized Logistic Regression Model using Majorization Minimization by Coordinate Descent (MMCD) Algorithm |
| cvq2 |
Calculate the predictive squared correlation coefficient |
| CVST |
Fast Cross-Validation via Sequential Testing |
| CVThresh |
Level-Dependent Cross-Validation Thresholding |
| cvTools |
Cross-validation tools for regression models |
| CVTuningCov |
Regularized Estimators of Covariance Matrices with CV Tuning |
| cvxbiclustr |
Convex Biclustering Algorithm |
| cvxclustr |
Splitting methods for convex clustering |
| cwhmisc |
Miscellaneous Functions for Math, Plotting, Printing, Statistics, Strings, and Tools |
| cwm |
Cluster Weighted Models by EM algorithm |
| cxxfunplus |
extend cxxfunction by saving the dynamic shared objects |
| cycleRtools |
Tools for Cycling Data Analysis |
| cyclocomp |
Cyclomatic Complexity of R Code |
| cycloids |
cycloids |
| cymruservices |
Query 'Team Cymru' 'IP' Address, Autonomous System Number ('ASN'), Border Gateway Protocol ('BGP'), Bogon and 'Malware' Hash Data Services |
| cyphid |
Cycle and Phase Identification for mastication data |
| cystiSim |
Agent-Based Model for Taenia_solium Transmission and Control |
| cytoDiv |
Cytometric diversity indices |