| R0 |
Estimation of R0 and Real-Time Reproduction Number from Epidemics |
| R1magic |
Compressive Sampling: Sparse Signal Recovery Utilities |
| R2admb |
'ADMB' to R Interface Functions |
| R2BayesX |
Estimate Structured Additive Regression Models with BayesX |
| R2Cuba |
Multidimensional Numerical Integration |
| r2d2 |
Bivariate (Two-Dimensional) Confidence Region and Frequency Distribution |
| r2dRue |
2d Rain Use Efficience model |
| R2G2 |
Converting R CRAN outputs into Google Earth |
| R2GUESS |
Wrapper Functions for GUESS |
| R2HTML |
HTML Exportation for R Objects |
| R2jags |
Using R to Run 'JAGS' |
| r2lh |
R to LaTeX and HTML |
| R2MLwiN |
Running 'MLwiN' from Within R |
| R2OpenBUGS |
Running OpenBUGS from R |
| R2PPT |
Simple R Interface to Microsoft PowerPoint using rcom or RDCOMClient |
| R2STATS |
A GTK GUI for fitting and comparing GLM and GLMM in R |
| r2stl |
r2stl, R package for visualizing data using a 3D printer |
| R2SWF |
Convert R Graphics to Flash Animations |
| R2wd |
Write MS-Word documents from R |
| R2WinBUGS |
Running 'WinBUGS' and 'OpenBUGS' from 'R' / 'S-PLUS' |
| R330 |
An R package for Stats 330 |
| R4CouchDB |
An R Convenience Layer for CouchDB |
| R4dfp |
4dfp MRI Image Read and Write Routines |
| r4ss |
R Code for Stock Synthesis |
| R6 |
Classes with Reference Semantics |
| R6Frame |
R6 Wrapper for Data Frames |
| race |
Racing methods for the selection of the best |
| RAD |
Fit RAD models to biological data |
| RADami |
R Package for Phylogenetic Analysis of RADseq Data |
| RADanalysis |
Normalization and Study of Rank Abundance Distributions |
| radar |
Fundamental Formulas for Radar |
| radarchart |
Radar Chart from Chart.js |
| radiomics |
Radiomic Image Processing Toolbox |
| RadioSonde |
Tools for plotting skew-T diagrams and wind profiles |
| radir |
Inverse-Regression Estimation of Radioactive Doses |
| RadOnc |
Analytical Tools for Radiation Oncology |
| RadTran |
Radon and Soil Gas Transport in 2D Porous Medium |
| RAdwords |
Loading Google Adwords Data into R |
| rafalib |
Convenience Functions for Routine Data Exploration |
| rags2ridges |
Ridge Estimation of Precision Matrices from High-Dimensional Data |
| ragt2ridges |
Ridge Estimation of the Vector Auto-Regressive (VAR) Processes |
| RAHRS |
Data Fusion Filters for Attitude Heading Reference System (AHRS) with Several Variants of the Kalman Filter and the Mahoney and Madgwick Filters |
| rainbow |
Rainbow Plots, Bagplots and Boxplots for Functional Data |
| raincpc |
Obtain and Analyze Rainfall Data from the Climate Prediction Center |
| rainfreq |
Rainfall Frequency (Design Storm) Estimates from the US National Weather Service |
| rAltmetric |
Retrieves Altmerics Data For Any Published Paper From Altmetric.com |
| RAM |
R for Amplicon-Sequencing-Based Microbial-Ecology |
| Ramble |
Combinatory Parser Implementation |
| Rambo |
The Random Subgraph Model |
| rAmCharts |
JavaScript Charts API Tool |
| Ramd |
Tools For Managing File/function Dependencies In R |
| ramify |
Additional Matrix Functionality |
| RAMP |
Regularized Generalized Linear Models with Interaction Effects |
| RAMpath |
Structural Equation Modeling using the reticular action model (RAM) Notation |
| ramps |
Bayesian Geostatistical Modeling with RAMPS |
| ramsvm |
Reinforced Angle-Based Multicategory Support Vector Machines |
| randaes |
Random number generator based on AES cipher |
| randNames |
Package Provides Access to Fake User Data |
| random |
True Random Numbers using RANDOM.ORG |
| randomcoloR |
Generate Attractive Random Colors |
| RandomFields |
Simulation and Analysis of Random Fields |
| RandomFieldsUtils |
Utilities for the Simulation and Analysis of Random Fields |
| randomForest |
Breiman and Cutler's Random Forests for Classification and Regression |
| randomForest.ddR |
Distributed 'randomForest' for Big Data using 'ddR' API |
| randomForestSRC |
Random Forests for Survival, Regression and Classification (RF-SRC) |
| randomGLM |
Random General Linear Model Prediction |
| randomizationInference |
Flexible Randomization-Based Inference |
| randomizeBE |
Function to Create a Random List for Crossover Studies |
| randomizeR |
Randomization for Clinical Trials |
| randomizr |
Easy to Use Tools for Common Forms of Random Assignment |
| randomLCA |
Random Effects Latent Class Analysis |
| randomNames |
Function for Generating Random Names and a Dataset |
| random.polychor.pa |
A Parallel Analysis with Polychoric Correlation Matrices |
| randomUniformForest |
Random Uniform Forests for Classification, Regression and Unsupervised Learning |
| randstr |
Generate Random Strings |
| randtests |
Testing randomness in R |
| randtoolbox |
Toolbox for Pseudo and Quasi Random Number Generation and RNG Tests |
| RandVar |
Implementation of Random Variables |
| rangeBuilder |
Occurrence Filtering and Generation of Species Range Polygons |
| rangeMapper |
A Platform for the Study of Macroecology of Life History Traits |
| rangemodelR |
Mid-Domain Effect and Species Richness Patterns |
| ranger |
A Fast Implementation of Random Forests |
| RankAggreg |
Weighted rank aggregation |
| Rankcluster |
Model-Based Clustering for Multivariate Partial Ranking Data |
| rankdist |
Distance Based Ranking Models |
| rankFD |
Rank-Based Tests for General Factorial Designs |
| rankhazard |
Rank-Hazard Plots |
| RankResponse |
Ranking Responses in a Single Response Question or a Multiple Response Question |
| RANKS |
Ranking of Nodes with Kernelized Score Functions |
| RANN |
Fast Nearest Neighbour Search (Wraps Arya and Mount's ANN Library) |
| RANN.L1 |
Fast Nearest Neighbour Search (Wraps ANN Library) Using L1 Metric |
| RAP |
Reversal Association Pattern |
| RapidPolygonLookup |
Polygon lookup using kd trees |
| RAPIDR |
Reliable Accurate Prenatal non-Invasive Diagnosis R package |
| RApiSerialize |
R API Serialization |
| RAppArmor |
Bindings to AppArmor and Security Related Linux Tools |
| rappdirs |
Application Directories: Determine Where to Save Data, Caches, and Logs |
| rapport |
A Report Templating System |
| rapportools |
Miscellaneous (stats) helper functions with sane defaults for reporting |
| RArcInfo |
Functions to import data from Arc/Info V7.x binary coverages |
| rareGE |
Testing Gene-Environment Interaction for Rare Genetic Variants |
| rareNMtests |
Ecological and biogeographical null model tests for comparing rarefaction curves |
| Rarity |
Calculation of Rarity Indices for Species and Assemblages of Species |
| rARPACK |
Solvers for Large Scale Eigenvalue and SVD Problems |
| RaschSampler |
Rasch Sampler |
| rasclass |
Supervised Raster Image Classification |
| rase |
Range Ancestral State Estimation for Phylogeography and Comparative Analyses |
| raster |
Geographic Data Analysis and Modeling |
| rasterVis |
Visualization Methods for Raster Data |
| RateDistortion |
Routines for Solving Rate-Distortion Problems |
| rateratio.test |
Exact rate ratio test |
| raters |
A Modification of Fleiss' Kappa in Case of Nominal and Ordinal Variables |
| rationalfun |
Manipulation of Rational Functions |
| RAtmosphere |
Standard Atmospheric profiles |
| rattle |
Graphical User Interface for Data Mining in R |
| rAverage |
Parameter estimation for the averaging model of Information Integration Theory |
| rAvis |
Interface to the Bird-Watching Dataset Proyecto AVIS |
| rbamtools |
Read and Write BAM (Binary Alignment) Files |
| rBayesianOptimization |
Bayesian Optimization of Hyperparameters |
| rbefdata |
BEFdata R package |
| rbenchmark |
Benchmarking routine for R |
| Rbent |
Robust Bent Line Regression |
| RBerkeley |
Oracle 'Berkeley DB' Interface for R |
| rBeta2009 |
The Beta Random Number and Dirichlet Random Vector Generating Functions |
| rbgm |
Tools for 'Box Geometry Model' (BGM) Files and Topology for the Atlantis Ecosystem Model |
| rbhl |
Interface to the 'Biodiversity' 'Heritage' Library |
| RbioRXN |
Process Rhea, KEGG, MetaCyc, Unipathway Biochemical Reaction Data |
| rbiouml |
Interact with BioUML Server |
| rbison |
Interface to the 'USGS' 'BISON' 'API' |
| Rbitcoin |
R & bitcoin integration |
| rbitcoinchartsapi |
R Package for the BitCoinCharts.com API |
| Rblpapi |
R Interface to Bloomberg |
| rbmn |
Handling Linear Gaussian Bayesian Networks |
| rbokeh |
R Interface for Bokeh |
| Rborist |
Extensible, Parallelizable Implementation of the Random Forest Algorithm |
| rbounds |
Perform Rosenbaum bounds sensitivity tests for matched and unmatched data |
| RBPcurve |
The Residual-Based Predictiveness Curve |
| rbugs |
Fusing R and OpenBugs and Beyond |
| rbundler |
Rbundler manages an application's dependencies systematically and repeatedly |
| rbvs |
Ranking-Based Variable Selection |
| RCA |
Relational Class Analysis |
| R.cache |
Fast and Light-Weight Caching (Memoization) of Objects and Results to Speed Up Computations |
| RCALI |
Calculation of the Integrated Flow of Particles between Polygons |
| rcanvec |
Access and Plot CanVec and CanVec+ Data for Rapid Basemap Creation in Canada |
| Rcapture |
Loglinear Models for Capture-Recapture Experiments |
| rCarto |
This package builds maps with a full cartographic layout |
| RCassandra |
R/Cassandra interface |
| rCBA |
CBA Classifier for R |
| rcbalance |
Large, Sparse Optimal Matching with Refined Covariate Balance |
| rcbsubset |
Optimal Subset Matching with Refined Covariate Balance |
| rccdates |
Date Functions for Swedish Cancer Data |
| rccmisc |
Miscellaneous R Functions for Swedish Regional Cancer Centers |
| rcdd |
Computational Geometry |
| rcdk |
Interface to the CDK Libraries |
| rcdklibs |
The CDK Libraries Packaged for R |
| RCEIM |
RCEIM - R Cross Entropy Inspired Method for Optimization |
| RcellData |
Example Dataset for 'Rcell' Package |
| Rcereal |
C++ Header Files of 'cereal' |
| Rcgmin |
Conjugate Gradient Minimization of Nonlinear Functions |
| rchallenge |
A Simple Data Science Challenge System |
| rchess |
Chess Move, Generation/Validation, Piece Placement/ Movement, and Check/Checkmate/Stalemate Detection |
| Rchoice |
Discrete Choice (Binary, Poisson and Ordered) Models with Random Parameters |
| rChoiceDialogs |
rChoiceDialogs collection |
| RChronoModel |
Post-Processing of the Markov Chain Simulated by ChronoModel or Oxcal |
| rcicr |
Reverse-Correlation Image-Classification Toolbox |
| RCircos |
Circos 2D Track Plot |
| RClimMAWGEN |
RClimMAWGEN (R Climate Index Multi-site Auto-regressive Weather GENeretor): a package to generate time series of climate indices from RMAWGEN generations |
| rClinicalCodes |
R tools for integrating with the www.clinicalcodes.org repository |
| rclinicaltrials |
Download Aggregate Trial Information and Results from ClinicalTrials.gov |
| RClone |
Partially Clonal Populations Analysis |
| Rclusterpp |
Linkable C++ clustering |
| rCMA |
R-to-Java Interface for 'CMA-ES' |
| rcmdcheck |
Run 'R CMD check' from 'R' and Capture Results |
| Rcmdr |
R Commander |
| RcmdrMisc |
R Commander Miscellaneous Functions |
| RcmdrPlugin.BCA |
Rcmdr Plug-In for Business and Customer Analytics |
| RcmdrPlugin.BiclustGUI |
'Rcmdr' Plug-in GUI for Biclustering |
| RcmdrPlugin.coin |
Rcmdr Coin Plug-In |
| RcmdrPlugin.depthTools |
R commander Depth Tools Plug-In |
| RcmdrPlugin.DoE |
R Commander Plugin for (industrial) Design of Experiments |
| RcmdrPlugin.doex |
Rcmdr plugin for Stat 4309 course |
| RcmdrPlugin.EACSPIR |
Plugin de R-Commander para el Manual 'EACSPIR' |
| RcmdrPlugin.EBM |
Rcmdr Evidence Based Medicine Plug-in Package |
| RcmdrPlugin.EcoVirtual |
Rcmdr EcoVirtual Plugin |
| RcmdrPlugin.epack |
Rcmdr plugin for time series |
| RcmdrPlugin.Export |
Export R Output to LaTeX or HTML |
| RcmdrPlugin.EZR |
R Commander Plug-in for the EZR (Easy R) Package |
| RcmdrPlugin.FactoMineR |
Graphical User Interface for FactoMineR |
| RcmdrPlugin.GWRM |
R Commander Plug-in for Fitting Generalized Waring Regression Models |
| RcmdrPlugin.HH |
Rcmdr Support for the HH Package |
| RcmdrPlugin.IPSUR |
An IPSUR Plugin for the R Commander |
| RcmdrPlugin.KMggplot2 |
An Rcmdr Plug-in for Kaplan-Meier Plots and Other Plots by Using the ggplot2 Package |
| RcmdrPlugin.lfstat |
Rcmdr Plug-In for low flow analysis |
| RcmdrPlugin.MA |
Graphical User Interface for Conducting Meta-Analyses in R |
| RcmdrPlugin.mosaic |
Adds menu items to produce mosaic plots and assoc plots to Rcmdr |
| RcmdrPlugin.MPAStats |
R Commander Plug-in for MPA Statistics |
| RcmdrPlugin.NMBU |
R Commander Plug-in for University Level Applied Statistics |
| RcmdrPlugin.orloca |
orloca Rcmdr Plug-in |
| RcmdrPlugin.plotByGroup |
Rcmdr plots by group using lattice |
| RcmdrPlugin.pointG |
Graphical POINT of view for questionnaire data Rcmdr Plug-In |
| RcmdrPlugin.qual |
Rcmdr plugin for quality control course |
| RcmdrPlugin.RMTCJags |
R MTC Jags 'Rcmdr' Plugin |
| RcmdrPlugin.ROC |
Rcmdr Receiver Operator Characteristic Plug-In PACKAGE |
| RcmdrPlugin.sampling |
Tools for sampling in Official Statistical Surveys |
| RcmdrPlugin.SCDA |
Rcmdr Plugin for Designing and Analyzing Single-case Experiments |
| RcmdrPlugin.seeg |
Rcmdr Plugin for seeg |
| RcmdrPlugin.SLC |
SLC Rcmdr Plug-in |
| RcmdrPlugin.SM |
Rcmdr Sport Management Plug-In |
| RcmdrPlugin.sos |
Efficiently search the R help pages |
| RcmdrPlugin.steepness |
Steepness Rcmdr Plug-in |
| RcmdrPlugin.survival |
R Commander Plug-in for the 'survival' Package |
| RcmdrPlugin.TeachingDemos |
Rcmdr Teaching Demos Plug-In |
| RcmdrPlugin.temis |
Graphical Integrated Text Mining Solution |
| RcmdrPlugin.UCA |
UCA Rcmdr Plug-in |
| RCMIP5 |
Tools for Manipulating and Summarizing CMIP5 Data |
| Rcolombos |
Interface to Colombos Compendia using the Exposed REST API |
| RColorBrewer |
ColorBrewer Palettes |
| RConics |
Computations on Conics |
| rcorpora |
A Collection of Small Text Corpora of Interesting Data |
| Rcplex |
R Interface to CPLEX |
| RCPmod |
Regions of common profiles modelling with mixtures-of-experts |
| Rcpp |
Seamless R and C++ Integration |
| Rcpp11 |
R and C++11 |
| RcppAnnoy |
'Rcpp' Bindings for 'Annoy', a Library for Approximate Nearest Neighbors |
| RcppAPT |
'Rcpp' Interface to the APT Package Manager |
| RcppArmadillo |
'Rcpp' Integration for the 'Armadillo' Templated Linear Algebra Library |
| RcppBDT |
Rcpp bindings for the Boost Date_Time library |
| RcppCCTZ |
'Rcpp' Bindings for the 'CCTZ' Library |
| RcppClassic |
Deprecated 'classic' Rcpp API |
| RcppClassicExamples |
Examples using RcppClassic to interface R and C++ |
| RcppCNPy |
Read-Write Support for NumPy Files via Rcpp |
| RcppDE |
Global Optimization by Differential Evolution in C++ |
| RcppDL |
Deep Learning Methods via Rcpp |
| RcppEigen |
'Rcpp' Integration for the 'Eigen' Templated Linear Algebra Library |
| RcppExamples |
Examples using 'Rcpp' to Interface R and C++ |
| RcppFaddeeva |
'Rcpp' Bindings for the 'Faddeeva' Package |
| RcppGSL |
'Rcpp' Integration for 'GNU GSL' Vectors and Matrices |
| RcppHoney |
Iterator Based Expression Template Expansion of Standard Operators |
| RcppMLPACK |
Rcpp Integration for MLPACK Library |
| RcppNumerical |
'Rcpp' Integration for Numerical Computing Libraries |
| RcppOctave |
Seamless Interface to Octave – And Matlab |
| RcppParallel |
Parallel Programming Tools for 'Rcpp' |
| RcppProgress |
An Interruptible Progress Bar with OpenMP Support for C++ in R Packages |
| RcppRedis |
'Rcpp' Bindings for 'Redis' using the 'hiredis' Library |
| RcppRoll |
Efficient Rolling / Windowed Operations |
| RcppShark |
R Interface to the Shark Machine Learning Library |
| RcppSMC |
Rcpp bindings for Sequential Monte Carlo |
| RcppStreams |
Rcpp Integration of the Streamulus DSEL for Stream Processing |
| RcppTOML |
'Rcpp' Bindings to Parser for Tom's Obvious Markup Language |
| RcppXts |
Interface the xts API via Rcpp |
| RcppZiggurat |
'Rcpp' Integration of Different "Ziggurat" Normal RNG Implementations |
| rcqp |
Interface to the Corpus Query Protocol |
| RCriteo |
Loading Criteo Data into R |
| rcrossref |
Client for Various 'CrossRef' 'APIs' |
| rcrypt |
Symmetric File Encryption Using GPG |
| RCryptsy |
Access to Cryptsy Crypto-Currency Exchange Public Information API via R |
| Rcsdp |
R Interface to the CSDP Semidefinite Programming Library |
| rcss |
Convex Switching Systems |
| rCUR |
CUR decomposition package |
| RCurl |
General Network (HTTP/FTP/...) Client Interface for R |
| Rd2roxygen |
Convert Rd to Roxygen Documentation |
| rda |
Shrunken Centroids Regularized Discriminant Analysis |
| RDataCanvas |
Basic Runtime Support for Datacanvas.io |
| rdatacite |
'DataCite' Client for 'OAI-PMH' Methods and their Search 'API' |
| rdatamarket |
Data access API for DataMarket.com |
| rdd |
Regression Discontinuity Estimation |
| rddtools |
Toolbox for Regression Discontinuity Design ('RDD') |
| rDEA |
Robust Data Envelopment Analysis (DEA) for R |
| rdefra |
Interact with the UK AIR Pollution Database from DEFRA |
| rdetools |
Relevant Dimension Estimation (RDE) in Feature Spaces |
| R.devices |
Unified Handling of Graphics Devices |
| rdian |
Client Library for The Guardian |
| RDIDQ |
It perform Quality check on data |
| RDieHarder |
R interface to the dieharder RNG test suite |
| Rdistance |
Distance Sampling Analyses |
| RDML |
Importing Real-Time Thermo Cycler (qPCR) Data from RDML Format Files |
| rDNA |
R Bindings for the Discourse Network Analyzer |
| rDNAse |
Generating Various Numerical Representation Schemes of DNA Sequences |
| rdnb |
R Interface to the Deutsche Nationalbibliothek (German National Library) API |
| rdomains |
Get the Category of Content Hosted by a Domain |
| Rdpack |
Update and Manipulate Rd Documentation Objects |
| rdrobust |
Robust Data-Driven Statistical Inference in Regression-Discontinuity Designs |
| rdrop2 |
Programmatic Interface to the 'Dropbox' API |
| rdryad |
Access for Dryad Web Services |
| RDS |
Respondent-Driven Sampling |
| Rdsdp |
R Interface to DSDP Semidefinite Programming Library |
| Rdsm |
Threads Environment for R |
| RDSTK |
An R wrapper for the Data Science Toolkit API |
| rDVR |
The rDVR package allows you to start stop and save a video server from within R |
| ReacTran |
Reactive transport modelling in 1D, 2D and 3D |
| readbitmap |
Simple Unified Interface to Read Bitmap Images (BMP,JPEG,PNG) |
| readBrukerFlexData |
Reads Mass Spectrometry Data in Bruker *flex Format |
| readbulk |
Read and Combine Multiple Data Files |
| read.dbc |
Read Data Stored in DBC (Compressed DBF) Files |
| reader |
Suite of Functions to Flexibly Read Data from Files |
| readMLData |
Reading Machine Learning Benchmark Data Sets in Different Formats |
| readMzXmlData |
Reads Mass Spectrometry Data in mzXML Format |
| readODS |
Read ODS Files |
| readr |
Read Tabular Data |
| readstata13 |
Import Stata Data Files |
| readxl |
Read Excel Files |
| RealVAMS |
Multivariate VAM Fitting |
| reams |
Resampling-Based Adaptive Model Selection |
| Rearrangement |
Monotonize Point and Interval Functional Estimates by Rearrangement |
| REAT |
Regional Economic Analysis Tools |
| REBayes |
Empirical Bayes Estimation and Inference in R |
| rebird |
R Client for the eBird Database of Bird Observations |
| rebmix |
Finite Mixture Modeling, Clustering & Classification |
| rebus |
Build Regular Expressions in a Human Readable Way |
| rebus.base |
Core Functionality for the 'rebus' Package |
| rebus.datetimes |
Date and Time Extensions for the 'rebus' Package |
| rebus.numbers |
Numeric Extensions for the 'rebus' Package |
| rebus.unicode |
Unicode Extensions for the 'rebus' Package |
| RECA |
Relevant Component Analysis for Supervised Distance Metric Learning |
| rechonest |
R Interface to Echo Nest API |
| ReCiPa |
Redundancy Control in Pathways databases |
| recluster |
Ordination Methods for the Analysis of Beta-Diversity Indices |
| recmap |
Compute the Rectangular Statistical Cartogram |
| recoder |
A Simple and Flexible Recoder |
| recommenderlab |
Lab for Developing and Testing Recommender Algorithms |
| recommenderlabBX |
Book-Crossing Dataset (BX) for 'recommenderlab' |
| recommenderlabJester |
Jester Dataset for 'recommenderlab' |
| reconstructr |
Session Reconstruction and Analysis |
| RecordLinkage |
Record Linkage in R |
| Records |
Record Values and Record Times |
| recosystem |
Recommender System using Matrix Factorization |
| reda |
Recurrent Event Data Analysis |
| REdaS |
Companion Package to the Book 'R: Einführung durch angewandte Statistik' |
| redcapAPI |
R Interface to REDCap |
| REDCapR |
Interaction Between R and REDCap |
| RedditExtractoR |
Reddit Data Extraction Toolkit |
| reddPrec |
Reconstruction of Daily Data - Precipitation |
| redist |
Markov Chain Monte Carlo Methods for Redistricting Simulation |
| redland |
RDF Library Bindings in R |
| rEDM |
Applications of Empirical Dynamic Modeling from Time Series |
| REEMtree |
Regression Trees with Random Effects for Longitudinal (Panel) Data |
| ref |
References for R |
| referenceIntervals |
Reference Intervals |
| RefFreeEWAS |
EWAS using Reference-Free DNA Methylation Mixture Deconvolution |
| refGenome |
Gene and Splice Site Annotation Using Annotation Data from Ensembl and UCSC Genome Browsers |
| RefManageR |
Straightforward 'BibTeX' and 'BibLaTeX' Bibliography Management |
| refnr |
Refining Data Table Using a Set of Formulas |
| refset |
Subsets with Reference Semantics |
| refund |
Regression with Functional Data |
| refund.shiny |
Interactive Plotting for Functional Data Analyses |
| refund.wave |
Wavelet-Domain Regression with Functional Data |
| RegClust |
Cluster analysis via regression coefficients |
| reGenotyper |
Detecting Mislabeled Samples in Genetic Data |
| REGENT |
Risk Estimation for Genetic and Environmental Traits |
| regexr |
Readable Regular Expressions |
| registry |
Infrastructure for R Package Registries |
| reglogit |
Simulation-Based Regularized Logistic Regression |
| regpro |
Nonparametric Regression |
| regress |
Gaussian linear models with linear covariance structure |
| RegressionFactory |
Expander Functions for Generating Full Gradient and Hessian from Single- and Multi-Slot Base Distributions |
| regRSM |
Random Subspace Method (RSM) for Linear Regression |
| regsel |
Variable Selection and Regression |
| regsem |
Performs Regularization on Structural Equation Models |
| regspec |
Non-Parametric Bayesian Spectrum Estimation for Multirate Data |
| regsubseq |
Detect and Test Regular Sequences and Subsequences |
| regtest |
Regression testing |
| rehh |
Searching for Footprints of Selection using Haplotype Homozygosity Based Tests |
| rela |
Item Analysis Package with Standard Errors |
| relaimpo |
Relative importance of regressors in linear models |
| Relatedness |
An Algorithm to Infer Relatedness |
| relations |
Data Structures and Algorithms for Relations |
| relax |
relax – R Editor for Literate Analysis and lateX |
| relaxnet |
Relaxation of glmnet models (as in relaxed lasso, Meinshausen 2007) |
| relaxo |
Relaxed Lasso |
| reldist |
Relative Distribution Methods |
| relen |
Compute Relative Entropy |
| relevent |
Relational Event Models |
| Reliability |
Functions for estimating parameters in software reliability models |
| ReliabilityTheory |
Tools for Structural Reliability Analysis |
| reliaR |
Package for some probability distributions |
| relimp |
Relative Contribution of Effects in a Regression Model |
| relMix |
Relationship Inference for DNA Mixtures |
| relSim |
Relative Simulator |
| relsurv |
Relative Survival |
| RelValAnalysis |
Relative Value Analysis |
| rem |
Relational Event Models (REM) |
| rematch |
Match Regular Expressions with a Nicer 'API' |
| remix |
Remix your data |
| rEMM |
Extensible Markov Model for Modelling Temporal Relationships Between Clusters |
| remMap |
Regularized Multivariate Regression for Identifying Master Predictors |
| remote |
Empirical Orthogonal Teleconnections in R |
| remoter |
Remote R: Control a Remote R Session from a Local One |
| REndo |
Fitting Linear Models with Endogenous Regressors when No External Instruments are Available |
| Renext |
Renewal Method for Extreme Values Extrapolation |
| RenextGUI |
GUI for Renext |
| rentrez |
Entrez in R |
| Reol |
R interface to the Encyclopedia of Life |
| ReorderCluster |
Reordering the dendrogram according to the class labels |
| RepeatABEL |
GWAS for Multiple Observations on Related Individuals |
| RepeatedHighDim |
Global tests for expression data of high-dimensional sets of molecular features |
| repfdr |
Replicability Analysis for Multiple Studies of High Dimension |
| repijson |
Tools for Handling EpiJSON (Epidemiology Data) Files |
| replicatedpp2w |
Two-Way ANOVA-Like Method to Analyze Replicated Point Patterns |
| replicationInterval |
Replication Interval Functions |
| repmis |
Miscellaneous Tools for Reproducible Research |
| repo |
A Data-Centered Data Flow Manager |
| repolr |
Repeated Measures Proportional Odds Logistic Regression |
| ReporteRs |
Microsoft Word, Microsoft PowerPoint and HTML Documents Generation |
| ReporteRsjars |
External jars required for package ReporteRs |
| reportr |
A General Message and Error Reporting System |
| reportRx |
Tools for automatically generating reproducible clinical report |
| reports |
Assist the Workflow of Writing Academic Articles and Other Reports |
| reporttools |
Generate LaTeX Tables of Descriptive Statistics |
| REPPlab |
R Interface to 'EPP-Lab', a Java Program for Exploratory Projection Pursuit |
| repr |
Serializable Representations |
| represent |
Determine the representativity of two multidimensional data sets |
| represtools |
Reproducible Research Tools |
| reproducer |
Reproduce Statistical Analyses and Meta-Analyses |
| REPTILE |
Regulatory DNA Element Prediction |
| REQS |
R/EQS Interface |
| request |
High Level 'HTTP' Client |
| rerddap |
General Purpose Client for 'ERDDAP' Servers |
| REREFACT |
Reordering and/or Reflecting Factors for Simulation Studies with Exploratory Factor Analysis |
| reReg |
Recurrent Event Regression |
| resample |
Resampling Functions |
| resampledata |
Data Sets for Mathematical Statistics with Resampling in R |
| resemble |
Regression and Similarity Evaluation for Memory-Based Learning in Spectral Chemometrics |
| reservoir |
Tools for Analysis, Design, and Operation of Water Supply Storages |
| reshape |
Flexibly reshape data |
| reshape2 |
Flexibly Reshape Data: A Reboot of the Reshape Package |
| reshapeGUI |
A GUI for the reshape2 and plyr packages |
| ResistorArray |
electrical properties of resistor networks |
| ResourceSelection |
Resource Selection (Probability) Functions for Use-Availability Data |
| RESS |
Integrates R and Essentia |
| REST |
RcmdrPlugin Easy Script Templates |
| restimizeapi |
Functions for Working with the 'www.estimize.com' Web Services |
| restlos |
Robust Estimation of Location and Scatter |
| restorepoint |
Debugging with Restore Points |
| resumer |
Build Resumes with R |
| rethinker |
RethinkDB Client |
| retimes |
Reaction Time Analysis |
| retistruct |
Retinal Reconstruction Program |
| retrosheet |
Import Professional Baseball Data from 'Retrosheet' |
| reutils |
Talk to the NCBI EUtils |
| reval |
Repeated Function Evaluation for Sensitivity Analysis |
| revealedPrefs |
Revealed Preferences and Microeconomic Rationality |
| revealjs |
R Markdown Format for 'reveal.js' Presentations |
| RevEcoR |
Reverse Ecology Analysis on Microbiome |
| reweight |
Adjustment of Survey Respondent Weights |
| rex |
Friendly Regular Expressions |
| Rexperigen |
R Interface to Experigen |
| rexpokit |
R wrappers for EXPOKIT; other matrix functions |
| Rfacebook |
Access to Facebook API via R |
| Rfast |
Fast R Functions |
| RFc |
Client for FetchClimate Web Service |
| rFDSN |
Get Seismic Data from the International Federation of Digital Seismograph Networks |
| rFerns |
Random Ferns Classifier |
| RFGLS |
Rapid Feasible Generalized Least Squares |
| RFgroove |
Importance Measure and Selection for Groups of Variables with Random Forests |
| rfigshare |
An R Interface to 'figshare' |
| R.filesets |
Easy Handling of and Access to Files Organized in Structured Directories |
| RFinanceYJ |
RFinanceYJ |
| RFinfer |
Inference for Random Forests |
| rfishbase |
R Interface to 'FishBase' |
| rfisheries |
'Programmatic Interface to the 'openfisheries.org' API' |
| Rfit |
Rank Estimation for Linear Models |
| rflann |
Basic R Interface to the FLANN C++ Library |
| RFLPtools |
Tools to analyse RFLP data |
| RFmarkerDetector |
Multivariate Analysis of Metabolomics Data using Random Forests |
| rfml |
MarkLogic NoSQL Database Server in-Database Analytics for R |
| Rfmtool |
Fuzzy Measure Tools for R |
| rfoaas |
R Interface to 'FOAAS' |
| RFOC |
Graphics for Spherical Distributions and Earthquake Focal Mechanisms |
| RForcecom |
Data Integration Feature for Force.com and Salesforce.com |
| rfordummies |
Code Examples to Accompany the Book "R for Dummies" |
| rforensicbatwing |
BATWING for calculating forensic trace-suspect match probabilities |
| RFormatter |
R Source Code Formatter |
| rfPermute |
Estimate Permutation p-Values for Random Forest Importance Metrics |
| RFreak |
R/FrEAK interface |
| rfUtilities |
Random Forests Model Selection and Performance Evaluation |
| RGA |
A Google Analytics API Client |
| rgabriel |
Gabriel Multiple Comparison Test and Plot the Confidence Interval on Barplot |
| rgam |
Robust Generalized Additive Model |
| rGammaGamma |
Gamma convolutions for methylation array background correction |
| rgbif |
Interface to the Global 'Biodiversity' Information Facility 'API' |
| Rgbp |
Hierarchical Modeling and Frequency Method Checking on Overdispersed Gaussian, Poisson, and Binomial Data |
| RGCCA |
RGCCA and Sparse GCCA for multi-block data analysis |
| rgcvpack |
R Interface for GCVPACK Fortran Package |
| rgdal |
Bindings for the Geospatial Data Abstraction Library |
| RGENERATE |
Tools To Generate Vector Time Series |
| RGENERATEPREC |
Tools To Generate Daily-Precipitation Time Series |
| RGenetics |
R packages for genetics research |
| rgenoud |
R Version of GENetic Optimization Using Derivatives |
| rgeolocate |
IP Address Geolocation |
| rgeos |
Interface to Geometry Engine - Open Source (GEOS) |
| rgeospatialquality |
Wrapper for the Geospatial Data Quality REST API |
| rgexf |
Build, Import and Export GEXF Graph Files |
| rggobi |
Interface between R and GGobi |
| rgho |
Access WHO Global Health Observatory Data from R |
| RGIFT |
Create quizzes in GIFT Format |
| rgl |
3D Visualization Using OpenGL |
| rglobi |
R Interface to Global Biotic Interactions |
| Rglpk |
R/GNU Linear Programming Kit Interface |
| rglwidget |
'rgl' in 'htmlwidgets' Framework |
| Rgnuplot |
R Interface for Gnuplot |
| RGoogleAnalytics |
R Wrapper for the Google Analytics API |
| RGoogleAnalyticsPremium |
Unsampled Data in R for Google Analytics Premium Accounts |
| RGoogleFit |
R Interface to Google Fit API |
| RgoogleMaps |
Overlays on Google map tiles in R |
| rgp |
R genetic programming framework |
| rgpui |
UI for the RGP genetic programming framework |
| rgr |
Applied Geochemistry EDA |
| RGraphics |
Data and Functions from the Book R Graphics, Second Edition |
| rgrass7 |
Interface Between GRASS 7 Geographical Information System and R |
| rGroovy |
Groovy Language Integration |
| RGtk2 |
R bindings for Gtk 2.8.0 and above |
| RGtk2Extras |
Data frame editor and dialog making wrapper for RGtk2 |
| RH2 |
DBI/RJDBC interface to h2 Database |
| rhandsontable |
Interface to the 'Handsontable.js' Library |
| rHealthDataGov |
Retrieve data sets from the HealthData.gov data API |
| rhosp |
Side Effect Risks in Hospital : Simulation and Estimation |
| Rhpc |
Permits *apply() Style Dispatch for 'HPC' |
| RhpcBLASctl |
Control the Number of Threads on 'BLAS' |
| rHpcc |
Interface between HPCC and R |
| RHRV |
Heart rate variability analysis of ECG data |
| RHT |
Regularized Hotelling's T-square Test for Pathway (Gene Set) Analysis |
| R.huge |
Methods for Accessing Huge Amounts of Data [deprecated] |
| ri |
ri: R package for performing randomization-based inference for experiments |
| RI2by2 |
Randomization inference for treatment effects on a binary outcome |
| riceware |
A Diceware Passphrase Implementation |
| rich |
Computes and compares species richnesses |
| RidgeFusion |
R Package for Ridge Fusion in Statistical Learning |
| ridigbio |
Interface to the iDigBio Data API |
| Ridit |
Ridit Analysis (An extension of the Kruskal-Wallis Test.) |
| riem |
Accesses Weather Data from the Iowa Environment Mesonet |
| RIFS |
Random Iterated Function System (RIFS) |
| RImageJROI |
Read 'ImageJ' Region of Interest (ROI) Files |
| RImagePalette |
Extract the Colors from Images |
| RImpala |
Using Cloudera 'Impala' Through 'R' |
| rinat |
Access iNaturalist data through APIs |
| rindex |
Indexing for R |
| RInside |
C++ Classes to Embed R in C++ Applications |
| RInSp |
R Individual Specialization (RInSp) |
| rio |
A Swiss-Army Knife for Data I/O |
| rioja |
Analysis of Quaternary Science Data |
| Rip46 |
Utils for IP4 and IP6 Addresses |
| ripa |
R Image Processing and Analysis |
| riskR |
Risk Management |
| riskRegression |
Risk Regression Models for Survival Analysis with Competing Risks |
| risksetROC |
Riskset ROC curve estimation from censored survival data |
| riskSimul |
Risk Quantification for Stock Portfolios under the T-Copula Model |
| RISmed |
Download Content from NCBI Databases |
| Ritc |
Isothermal Titration Calorimetry (ITC) Data Analysis |
| rite |
The Right Editor to Write R |
| ritis |
Integrated Taxonomic Information System Client |
| RItools |
Randomization Inference Tools |
| riv |
Robust instrumental variables estimator |
| riverdist |
River Network Distance Computation, and Applications |
| rivernet |
Read, Analyze and Plot River Networks |
| riverplot |
Sankey or Ribbon Plots |
| rivervis |
River Visualisation Tool |
| Rivivc |
In vitro in vivo correlation linear level A |
| rivr |
Steady and Unsteady Open-Channel Flow Computation |
| RJaCGH |
Reversible Jump MCMC for the Analysis of CGH Arrays |
| rjade |
A Clean, Whitespace-Sensitive Template Language for Writing HTML |
| RJafroc |
Analysis of Data Acquired Using the Receiver Operating Characteristic Paradigm and Its Extensions |
| rjags |
Bayesian Graphical Models using MCMC |
| rJava |
Low-Level R to Java Interface |
| RJDBC |
Provides access to databases through the JDBC interface |
| rje |
Miscellaneous useful functions |
| r.jive |
Perform JIVE Decompositions for Multi-Source Data |
| rJPSGCS |
R-interface to Gene Drop Simulation from JPSGCS |
| Rjpstatdb |
R interface of the Gateway to Advanced and User-friendly Statistics Service |
| RJSDMX |
R Interface to SDMX Web Services |
| rjson |
JSON for R |
| RJSONIO |
Serialize R objects to JSON, JavaScript Object Notation |
| rjstat |
Read and Write 'JSON-stat' Data Sets |
| rJython |
R interface to Python via Jython |
| rkafka |
Using Apache 'Kafka' Messaging Queue Through 'R' |
| rkafkajars |
External Jars Required for Package 'rkafka' |
| RKEA |
R/KEA Interface |
| RKEAjars |
R/KEA Interface Jars |
| RKEEL |
Using Keel in R Code |
| RKEELdata |
Datasets from KEEL for it Use in RKEEL |
| RKEELjars |
Java Executable .jar Files for 'RKEEL' |
| RKlout |
Fetch Klout Scores for Twitter Users |
| rknn |
Random KNN Classification and Regression |
| Rknots |
Topological Analysis of Knotted Proteins, Biopolymers and 3D Structures |
| rkt |
Mann-Kendall Test, Seasonal and Regional Kendall Tests |
| rkvo |
Read Key/Value Pair Observations |
| Rlab |
Functions and Datasets Required for ST370 class |
| Rlabkey |
Data Exchange Between R and LabKey Server |
| rLakeAnalyzer |
Lake Physics Tools |
| rleafmap |
Interactive Maps with R and Leaflet |
| rlecuyer |
R Interface to RNG with Multiple Streams |
| Rlibeemd |
Ensemble Empirical Mode Decomposition (EEMD) and Its Complete Variant (CEEMDAN) |
| rLiDAR |
LiDAR Data Processing and Visualization |
| rLindo |
R Interface to LINDO API |
| Rlinkedin |
Access to the LinkedIn API via R |
| rlist |
A Toolbox for Non-Tabular Data Manipulation |
| rlm |
Robust Fitting of Linear Model |
| Rlof |
R Parallel Implementation of Local Outlier Factor(LOF) |
| RLogicalOps |
Process Logical Operations |
| RLRsim |
Exact (Restricted) Likelihood Ratio Tests for Mixed and Additive Models |
| rLTP |
R Interface to LTP-Cloud Service |
| RLumModel |
Modelling Ordinary Differential Equations Leading to Luminescence |
| RLumShiny |
'Shiny' Applications for the R Package 'Luminescence' |
| RM2 |
Revenue Management and Pricing Package |
| rmaf |
Refined Moving Average Filter |
| RMallow |
Fit Multi-Modal Mallows' Models to ranking data |
| Rmalschains |
Continuous Optimization using Memetic Algorithms with Local Search Chains (MA-LS-Chains) in R |
| rmapshaper |
Edit 'GeoJSON' and Spatial Objects |
| RmarineHeatWaves |
Detect Marine Heat Waves and Marine Cold Spells |
| RMark |
R Code for Mark Analysis |
| rmarkdown |
Dynamic Documents for R |
| rmatio |
Read and Write Matlab Files |
| R.matlab |
Read and Write MAT Files and Call MATLAB from Within R |
| RMAWGEN |
Multi-site Auto-regressive Weather GENerator |
| RMC |
Functions for fitting Markov models |
| rmcfs |
The MCFS-ID Algorithm for Feature Selection and Interdependency Discovery |
| rmdformats |
HTML Output Formats and Templates for 'rmarkdown' Documents |
| rmdHelpers |
Helper Functions for Rmd Documents |
| rmdshower |
'R' 'Markdown' Format for 'shower' Presentations |
| RMediation |
Mediation Analysis Confidence Intervals |
| rmeta |
Meta-analysis |
| rmetasim |
An Individual-Based Population Genetic Simulation Environment |
| R.methodsS3 |
S3 Methods Simplified |
| rmgarch |
Multivariate GARCH Models |
| rminer |
Data Mining Classification and Regression Methods |
| Rmisc |
Rmisc: Ryan Miscellaneous |
| Rmixmod |
An Interface for MIXMOD |
| RmixmodCombi |
Combining Mixture Components for Clustering |
| RMixpanel |
R API for Mixpanel |
| RMKdiscrete |
Sundry Discrete Probability Distributions |
| rmngb |
Miscellaneous Collection of Functions for Medical Data Analysis |
| RMOA |
Connect R with MOA for Massive Online Analysis |
| RMOAjars |
External jars required for package RMOA |
| RMongo |
MongoDB Client for R |
| rmongodb |
R-MongoDB driver |
| Rmonkey |
A Survey Monkey R Client |
| Rmosek |
The R-to-MOSEK Optimization Interface |
| rmp |
Rounded Mixture Package. Performs Probability Mass Function Estimation with Nonparametric Mixtures of Rounded Kernels |
| Rmpfr |
R MPFR - Multiple Precision Floating-Point Reliable |
| Rmpi |
Interface (Wrapper) to MPI (Message-Passing Interface) |
| RMRAINGEN |
RMRAINGEN (R Multi-site RAINfall GENeretor): a package to generate daily time series of rainfall from monthly mean values |
| rms |
Regression Modeling Strategies |
| rmsfact |
Amazing Random Facts About the World's Greatest Hacker |
| rms.gof |
Root-mean-square goodness-of-fit test for simple null hypothesis |
| RMThreshold |
Signal-Noise Separation in Random Matrices by using Eigenvalue Spectrum Analysis |
| RMTstat |
Distributions, Statistics and Tests derived from Random Matrix Theory |
| rmumps |
Wrapper for MUMPS Library |
| RM.weights |
Weighted Rasch Modeling and Extensions using Conditional Maximum Likelihood |
| RMySQL |
Database Interface and 'MySQL' Driver for R |
| rnaseqWrapper |
Wrapper for several R packages and scripts to automate RNA-seq analysis |
| RnavGraph |
Using Graphs as a Navigational Infrastructure |
| RnavGraphImageData |
Some image data used in the RnavGraph package demos |
| RNaviCell |
Visualization of High-Throughput Data on Large-Scale Biological Networks |
| rnbn |
Access NBN Data |
| RNCBIEUtilsLibs |
EUtils libraries for use in the R environment |
| RNCEP |
Obtain, Organize, and Visualize NCEP Weather Data |
| rncl |
An Interface to the Nexus Class Library |
| RND |
Risk Neutral Density Extraction Package |
| RndTexExams |
Build and Grade Multiple Choice Exams with Randomized Content |
| RNeo4j |
Neo4j Driver for R |
| rneos |
XML-RPC Interface to NEOS |
| rnetcarto |
Fast Network Modularity and Roles Computation by Simulated Annealing (Rgraph C Library Wrapper for R) |
| RNetCDF |
Interface to NetCDF Datasets |
| RNetLogo |
Provides an Interface to the Agent-Based Modelling Platform NetLogo |
| RNewsflow |
Tools for Analyzing Content Homogeneity and News Diffusion using Computational Text Analysis |
| RNeXML |
Semantically Rich I/O for the 'NeXML' Format |
| rngSetSeed |
Seeding the Default RNG with a Numeric Vector |
| rngtools |
Utility functions for working with Random Number Generators |
| rngWELL |
Toolbox for WELL Random Number Generators |
| rngwell19937 |
Random number generator WELL19937a with 53 or 32 bit output |
| RNiftyReg |
Image Registration Using the NiftyReg Library |
| rNMF |
Robust Nonnegative Matrix Factorization |
| rnn |
Recurrent Neural Network |
| rnoaa |
'NOAA' Weather Data from R |
| rNOMADS |
An Interface to the NOAA Operational Model Archive and Distribution System |
| rnpn |
Interface to the National 'Phenology' Network 'API' |
| rnrfa |
UK National River Flow Archive Data from R |
| roahd |
Robust Analysis of High Dimensional Data |
| ROAuth |
R Interface For OAuth |
| RobAStBase |
Robust Asymptotic Statistics |
| RobAStRDA |
Interpolation Grids for Packages of the 'RobASt' - Family of Packages |
| robCompositions |
Robust Estimation for Compositional Data |
| robcor |
Robust Correlations |
| robeth |
R functions for robust statistics |
| robfilter |
Robust Time Series Filters |
| RobLox |
Optimally robust influence curves and estimators for location and scale |
| RobLoxBioC |
Infinitesimally robust estimators for preprocessing omics data |
| robotstxt |
A 'robots.txt' Parser and 'Webbot'/'Spider'/'Crawler' Permissions Checker |
| RobPer |
Robust Periodogram and Periodicity Detection Methods |
| robreg3S |
Three-Step Regression and Inference for Cellwise and Casewise Contamination |
| RobRex |
Optimally robust influence curves for regression and scale |
| RobRSVD |
Robust Regularized Singular Value Decomposition |
| RObsDat |
Data Management for Hydrology and Beyond Using the Observations Data Model |
| robumeta |
Robust Variance Meta-Regression |
| robust |
Robust Library |
| RobustAFT |
Truncated Maximum Likelihood Fit and Robust Accelerated Failure Time Regression for Gaussian and Log-Weibull Case |
| robustbase |
Basic Robust Statistics |
| robustDA |
Robust Mixture Discriminant Analysis |
| RobustEM |
Robust Mixture Modeling Fitted via Spatial-EM Algorithm for Model-Based Clustering and Outlier Detection |
| robustETM |
Robust Methods using Exponential Tilt Model |
| robustfa |
An Object Oriented Solution for Robust Factor Analysis |
| robustgam |
Robust Estimation for Generalized Additive Models |
| RobustGaSP |
Robust Gaussian Stochastic Process Emulation |
| robustHD |
Robust Methods for High-Dimensional Data |
| robustlmm |
Robust Linear Mixed Effects Models |
| robustloggamma |
Robust Estimation of the Generalized log Gamma Model |
| robustrank |
Robust Rank-Based Tests |
| RobustRankAggreg |
Methods for robust rank aggregation |
| robustrao |
An Extended Rao-Stirling Diversity Index to Handle Missing Data |
| robustreg |
Robust Regression Functions |
| robustvarComp |
Robust Estimation of Variance Component Models |
| robustX |
eXperimental Functionality for Robust Statistics |
| ROC632 |
Construction of diagnostic or prognostic scoring system and internal validation of its discriminative capacities based on ROC curve and 0.633+ boostrap resampling |
| rocc |
ROC based classification |
| roccv |
ROC for Cross Validation Results |
| rockchalk |
Regression Estimation and Presentation |
| RockFab |
Rock fabric and strain analysis tools |
| rococo |
Robust Rank Correlation Coefficient and Test |
| ROCR |
Visualizing the Performance of Scoring Classifiers |
| ROCS |
Receiver Operating Characteristics Surface |
| ROCt |
Time-Dependent ROC Curve Estimators and Expected Utility Functions |
| ROCwoGS |
Non-parametric estimation of ROC curves without Gold Standard Test |
| RODBC |
ODBC Database Access |
| RODBCDBI |
Provides Access to Databases Through the ODBC Interface |
| RODBCext |
Parameterized Queries Extension for RODBC |
| rodd |
Optimal Discriminating Designs |
| rodeo |
A Code Generator for ODE-Based Models |
| rodham |
Fetch Hillary Rodham Clinton's Emails |
| RODM |
R interface to Oracle Data Mining |
| ROI |
R Optimization Infrastructure |
| ROI.plugin.cplex |
ROI Plug-in CPLEX |
| ROI.plugin.ecos |
ROI-Plugin ECOS |
| ROI.plugin.glpk |
ROI Plug-in GLPK |
| ROI.plugin.ipop |
ROI Plug-in {ipop} |
| ROI.plugin.nloptr |
ROI-Plugin NLOPTR |
| ROI.plugin.quadprog |
ROI Plug-in {quadprog} |
| ROI.plugin.scs |
ROI-Plugin SCS |
| ROI.plugin.symphony |
ROI Plug-in SYMPHONY |
| roll |
Rolling Statistics |
| rollbar |
Error Tracking and Logging |
| rollply |
Moving-Window Add-on for 'plyr' |
| ROMIplot |
Plots Surfaces of Rates of Mortality Improvement |
| R.oo |
R Object-Oriented Programming with or without References |
| Rook |
Rook - a web server interface for R |
| RootsExtremaInflections |
Finds roots, extrema and inflection points of a curve |
| rootSolve |
Nonlinear Root Finding, Equilibrium and Steady-State Analysis of Ordinary Differential Equations |
| rootWishart |
Distribution of Largest Root for Single and Double Wishart Settings |
| ropenaq |
Accesses Air Quality Data from the Open Data Platform OpenAQ |
| ROpenFIGI |
R Interface to OpenFIGI |
| ropensecretsapi |
R Package for the OpenSecrets.org API |
| ROpenWeatherMap |
R Interface to OpenWeatherMap API |
| ROptEst |
Optimally robust estimation |
| ROptEstOld |
Optimally robust estimation - old version |
| ROptimizely |
R Optimizely API |
| ROptRegTS |
Optimally robust estimation for regression-type models |
| ror |
Robust Ordinal Regression MCDA library |
| ROracle |
OCI Based Oracle Database Interface for R |
| rorcid |
Interface to the 'Orcid.org' 'API' |
| rorutadis |
Robust Ordinal Regression UTADIS |
| ROSE |
ROSE: Random Over-Sampling Examples |
| rosetteApi |
Rosette API |
| rosm |
Plot Raster Map Tiles from Open Street Map and Other Sources |
| rotationForest |
Fit and Deploy Rotation Forest Models |
| rotations |
Tools for Working with Rotation Data |
| Rothermel |
Rothermel fire spread model for R |
| rotl |
Interface to the 'Open Tree of Life' API |
| roughrf |
Roughened Random Forests for Binary Classification |
| RoughSetKnowledgeReduction |
Simplification of Decision Tables using Rough Sets |
| RoughSets |
Data Analysis Using Rough Set and Fuzzy Rough Set Theories |
| rowr |
Row-Based Functions for R Objects |
| roxygen2 |
In-Source Documentation for R |
| royston |
Royston's H Test: Multivariate Normality Test |
| RPANDA |
Phylogenetic ANalyses of DiversificAtion |
| rpanel |
Simple interactive controls for R using the tcltk library |
| rpart |
Recursive Partitioning and Regression Trees |
| rpartitions |
Code for integer partitioning |
| rpart.plot |
Plot 'rpart' Models: An Enhanced Version of 'plot.rpart' |
| rpartScore |
Classification trees for ordinal responses |
| rpart.utils |
Tools for parsing and manipulating rpart objects, including generating machine readable rules |
| rpca |
RobustPCA: Decompose a Matrix into Low-Rank and Sparse Components |
| rpcdsearch |
Tools for the Construction of Clinical Code Lists for Primary Care Database Studies |
| RPCLR |
RPCLR (Random-Penalized Conditional Logistic Regression) |
| Rpdb |
Read, write, visualize and manipulate PDB files |
| rpdo |
Pacific Decadal Oscillation Index Data |
| RPEnsemble |
Random Projection Ensemble Classification |
| rpf |
Response Probability Functions |
| rpg |
Easy Interface to Advanced PostgreSQL Features |
| rphast |
Interface to PHAST Software for Comparative Genomics |
| Rphylip |
An R interface for PHYLIP |
| Rphylopars |
Phylogenetic Comparative Tools for Missing Data and Within-Species Variation |
| rpivotTable |
Build Powerful Pivot Tables and Dynamically Slice & Dice your Data |
| rPlant |
Interface to the Agave API |
| rplexos |
Read and Analyze 'PLEXOS' Solutions |
| rplos |
Interface to the Search 'API' for 'PLoS' Journals |
| rplotengine |
R as a plotting engine |
| RPMG |
Graphical User Interface (GUI) for Interactive R Analysis Sessions |
| RPMM |
Recursively Partitioned Mixture Model |
| rpn |
Converter and Interpreter for Reverse Polish Notation Expressions |
| rpnf |
Point and Figure Package |
| Rpoppler |
PDF Tools Based on Poppler |
| rportfolios |
Random portfolio generation |
| RPostgreSQL |
R interface to the PostgreSQL database system |
| rPowerSampleSize |
Sample Size Computations Controlling the Type-II Generalized Family-Wise Error Rate |
| RPPairwiseDesign |
Resolvable partially pairwise balanced design and Space-filling design via association scheme |
| RPPanalyzer |
Reads, Annotates, and Normalizes Reverse Phase Protein Array Data |
| rPref |
Database Preferences and Skyline Computation |
| RPresto |
DBI Connector to Presto |
| rprev |
Estimating Disease Prevalence from Registry Data |
| rprime |
Functions for Working with 'Eprime' Text Files |
| rprintf |
Adaptive Builder for Formatted Strings |
| rprojroot |
Finding Files in Project Subdirectories |
| RProtoBuf |
R Interface to the Protocol Buffers API |
| rpsychi |
Statistics for psychiatric research |
| RPtests |
Goodness of Fit Tests for High-Dimensional Linear Regression Models |
| rpubchem |
rpubchem - Interface to the PubChem Collection |
| RPublica |
ProPublica API Client |
| RPushbullet |
R Interface to the Pushbullet Messaging Service |
| RPyGeo |
ArcGIS Geoprocessing in R via Python |
| rPython |
Package Allowing R to Call Python |
| RQDA |
R-based Qualitative Data Analysis |
| rqPen |
Penalized Quantile Regression |
| Rquake |
Seismic Hypocenter Determination |
| RQuantLib |
R Interface to the 'QuantLib' Library |
| rr |
Statistical Methods for the Randomized Response Technique |
| Rramas |
Matrix population models |
| rrBLUP |
Ridge Regression and Other Kernels for Genomic Selection |
| rrBlupMethod6 |
Re-parametrization of RR-BLUP to allow for a fixed residual variance |
| rrcov |
Scalable Robust Estimators with High Breakdown Point |
| rrcovHD |
Robust Multivariate Methods for High Dimensional Data |
| rrcovNA |
Scalable Robust Estimators with High Breakdown Point for Incomplete Data |
| Rrdrand |
'DRNG' on Intel CPUs with the 'RdRand' Instruction for R |
| rrecsys |
Environment for Assessing Recommender Systems |
| rredis |
"Redis" Key/Value Database Client |
| rredlist |
'IUCN' Red List Client |
| rrefine |
R Client for OpenRefine API |
| rrepast |
Invoke 'Repast Simphony' Simulation Models |
| RRF |
Regularized Random Forest |
| rriskDistributions |
Fitting Distributions to Given Data or Known Quantiles |
| rrlda |
Robust Regularized Linear Discriminant Analysis |
| RRNA |
Secondary Structure Plotting for RNA |
| RRreg |
Correlation and Regression Analyses for Randomized Response Data |
| R.rsp |
Dynamic Generation of Scientific Reports |
| RRTCS |
Randomized Response Techniques for Complex Surveys |
| RSA |
Response Surface Analysis |
| RSADBE |
Data related to the book "R Statistical Application Development by Example" |
| rsae |
Robust Small Area Estimation |
| RSAGA |
SAGA Geoprocessing and Terrain Analysis in R |
| RSAgeo |
Resampling-Based Analysis of Geostatistical Data |
| Rsampletrees |
Sampletrees Input/Output Processing |
| Rsampling |
Ports the Workflow of "Resampling Stats" Add-in to R |
| RSAP |
SAP Netweaver RFC connector for R |
| rSARP |
Functions to Create and Evaluate Search and Rescue Plans |
| rsatscan |
Tools, Classes, and Methods for Interfacing with SaTScan Stand-Alone Software |
| rSCA |
An R Package for Stepwise Cluster Analysis |
| rscala |
Bi-Directional Interface Between R and Scala with Callbacks |
| rscimark |
SciMark 2.0 Benchmark for Scientific and Numerical Computing |
| RSclient |
Client for Rserve |
| rsconnect |
Deployment Interface for R Markdown Documents and Shiny Applications |
| rscopus |
Scopus Database API Interface |
| rscorecard |
A Method to Download Department of Education College Scorecard Data |
| rscproxy |
statconn: provides portable C-style interface to R (StatConnector) |
| RSDA |
R to Symbolic Data Analysis |
| rsdepth |
Ray Shooting Depth (i.e. RS Depth) functions for bivariate analysis |
| rsdmx |
Tools for Reading SDMX Data and Metadata |
| RSeed |
borenstein analysis |
| rseedcalc |
Estimating the Proportion of Genetically Modified Seeds in Seedlots via Multinomial Group Testing |
| RSEIS |
Seismic Time Series Analysis Tools |
| RSelenium |
R bindings for Selenium WebDriver |
| rsem |
Robust Structural Equation Modeling with Missing Data and Auxiliary Variables |
| RSentiment |
Analyse Sentiment of English Sentences |
| Rserve |
Binary R server |
| rSFA |
Slow Feature Analysis in R |
| rsgcc |
Gini methodology-based correlation and clustering analysis of microarray and RNA-Seq gene expression data |
| rsggm |
Robust Sparse Gaussian Graphical Modeling via the Gamma-Divergence |
| RSGHB |
Functions for Hierarchical Bayesian Estimation: A Flexible Approach |
| RSiena |
Siena - Simulation Investigation for Empirical Network Analysis |
| rsig |
Robust Signature Selection for Survival Outcomes |
| RsimMosaic |
R Simple IMage Mosaic creation library |
| RSiteCatalyst |
R Client for Adobe Analytics API V1.4 |
| RSKC |
Robust sparse K-means |
| rslp |
A Stemming Algorithm for the Portuguese Language |
| rslurm |
Submit R Calculations to a 'SLURM' Cluster |
| rsm |
Response-Surface Analysis |
| RSmartlyIO |
Loading Facebook and Instagram Advertising Data from Smartly.io |
| RSMET |
Get Real-Time Meteorological Data in SMET Format |
| rsml |
Plant Root System Markup Language (RSML) File Processing |
| RSNNS |
Neural Networks in R using the Stuttgart Neural Network Simulator (SNNS) |
| rsnps |
Get SNP (Single-Nucleotide Polymorphism) Data on the Web |
| RSNPset |
Efficient Score Statistics for Genome-Wide SNP Set Analysis |
| RSocrata |
Download or Upload 'Socrata' Data Sets |
| RSofia |
Port of sofia-ml (http://code.google.com/p/sofia-ml/) to R |
| Rsolnp |
General Non-Linear Optimization |
| Rsomoclu |
Somoclu |
| rspa |
Adapt Numerical Records to Fit (in)Equality Restrictions |
| rSPACE |
Spatially-Explicit Power Analysis for Conservation and Ecology |
| RSpectra |
Solvers for Large Scale Eigenvalue and SVD Problems |
| RSpincalc |
Conversion Between Attitude Representations of DCM, Euler Angles, Quaternions, and Euler Vectors |
| RSPS |
RNA-Seq Power Simulation |
| rsq |
Coefficient of Determination |
| RSQLite |
SQLite Interface for R |
| RSQLServer |
SQL Server R Database Interface (DBI) and dplyr SQL Backend |
| Rssa |
A Collection of Methods for Singular Spectrum Analysis |
| rstackdeque |
Persistent Fast Amortized Stack and Queue Data Structures |
| rstan |
R Interface to Stan |
| rstanarm |
Bayesian Applied Regression Modeling via Stan |
| RStars |
Access to the Digital Universe Data set API |
| RStata |
A Bit of Glue Between R and Stata |
| rstatscn |
R Interface for China National Data |
| rstiefel |
Random orthonormal matrix generation on the Stiefel manifold |
| RStoolbox |
Tools for Remote Sensing Data Analysis |
| RStorm |
Simulate and Develop Streaming Processing in [R] |
| rstpm2 |
Generalized Survival Models |
| rstream |
Streams of Random Numbers |
| RStripe |
A Convenience Interface for the Stripe Payment API |
| rstudioapi |
Safely Access the RStudio API |
| rsubgroup |
Subgroup Discovery and Analytics |
| Rsundials |
Suite of Nonlinear Differential Algebraic Equations Solvers in R |
| rsunlight |
Interface to 'Sunlight' Foundation 'APIs' |
| Rsurrogate |
Robust Estimation of the Proportion of Treatment Effect Explained by Surrogate Marker Information |
| RSurveillance |
Design and Analysis of Disease Surveillance Activities |
| RSurvey |
Analysis of Spatially Distributed Data |
| rsvd |
Randomized Singular Value Decomposition |
| rsvg |
Render SVG Images into PDF, PNG, PostScript, or Bitmap Arrays |
| RSvgDevice |
An R SVG graphics device |
| RSVGTipsDevice |
An R SVG Graphics Device with Dynamic Tips and Hyperlinks |
| Rsymphony |
SYMPHONY in R |
| rSymPy |
R interface to SymPy computer algebra system |
| rtable |
Tabular Reporting Functions |
| rTableICC |
Random Generation of Contingency Tables |
| rtape |
Manage and manipulate large collections of R objects stored as tape-like files |
| RTConnect |
Tools for analyzing sales report files of iTunes Connect |
| RTDE |
Robust Tail Dependence Estimation |
| rtdists |
Response Time Distributions |
| rtematres |
The rtematres API package |
| rTensor |
Tools for Tensor Analysis and Decomposition |
| RTextTools |
Automatic Text Classification via Supervised Learning |
| RTextureMetrics |
Functions for calculation of texture metrics for Grey Level Co-occurrence Matrices |
| rtf |
Rich Text Format (RTF) Output |
| rtfbs |
Transcription Factor Binding Site Identification Tool |
| rticles |
Article Formats for R Markdown |
| rtiff |
Read and Write TIFF Files |
| rtimes |
Client for New York Times 'APIs' |
| rtip |
Inequality, Welfare and Poverty Indices and Curves using the EU-SILC Data |
| rtkore |
STK++ Core Library Integration to R using Rcpp |
| rtkpp |
STK++ Integration to R using Rcpp |
| Rtnmin |
Truncated Newton Function Minimization with Bounds Constraints |
| RTOMO |
Visualization for Seismic Tomography |
| rtop |
Interpolation of Data with Variable Spatial Support |
| RTriangle |
Triangle - A 2D Quality Mesh Generator and Delaunay Triangulator |
| rts |
Raster Time Series Analysis |
| Rtsne |
T-Distributed Stochastic Neighbor Embedding using a Barnes-Hut Implementation |
| rtson |
Typed JSON |
| Rttf2pt1 |
'ttf2pt1' Program |
| Rtts |
Convert Text into Speech |
| RtutoR |
Tutorial App for Learning R |
| Rtwalk |
The R Implementation of the 't-walk' MCMC Algorithm |
| rtype |
A strong type system for R |
| rtypeform |
Interface to 'typeform' Results |
| Ruchardet |
R package to detect character encoding |
| rucm |
Implementation of Unobserved Components Model (UCM) |
| rugarch |
Univariate GARCH Models |
| rUnemploymentData |
Data and Functions for USA State and County Unemployment Data |
| RUnit |
R Unit Test Framework |
| runittotestthat |
Convert 'RUnit' Test Functions into 'testthat' Tests |
| Runiversal |
Runiversal - Package for converting R objects to Java variables and XML |
| runjags |
Interface Utilities, Model Templates, Parallel Computing Methods and Additional Distributions for MCMC Models in JAGS |
| Runuran |
R Interface to the UNU.RAN Random Variate Generators |
| RunuranGUI |
A GUI for the UNU.RAN random variate generators |
| rusda |
Interface to USDA Databases |
| R.utils |
Various Programming Utilities |
| ruv |
Detect and Remove Unwanted Variation using Negative Controls |
| rv |
Simulation-based random variable objects |
| RVAideMemoire |
Diverse Basic Statistical and Graphical Functions |
| rvalues |
R-Values for Ranking in High-Dimensional Settings |
| Rvcg |
Manipulations of Triangular Meshes Based on the 'VCGLIB' API |
| rvcheck |
R/Package Version Check |
| rversions |
Query 'R' Versions, Including 'r-release' and 'r-oldrel' |
| rvertnet |
Search 'Vertnet', a 'Database' of Vertebrate Specimen Records |
| rvest |
Easily Harvest (Scrape) Web Pages |
| RVFam |
Rare Variants Association Analyses with Family Data |
| rvg |
R Graphics Devices for Vector Graphics Output |
| rvgtest |
Tools for Analyzing Non-Uniform Pseudo-Random Variate Generators |
| rvHPDT |
Calling haplotype-based and variant-based pedigree disequilibrium test for rare variants in pedigrees |
| RVideoPoker |
Play Video Poker with R |
| RViennaCL |
ViennaCL C++ Header Files |
| Rvmmin |
Variable Metric Nonlinear Function Minimization |
| RVowpalWabbit |
R Interface to the Vowpal Wabbit |
| RVPedigree |
Methods for Family-Based Rare-Variant Genetic Association Tests |
| rvsel |
Rare Variant Selection Procedure |
| RVsharing |
Probability of Sharing Rare Variants among Relatives |
| rvTDT |
population control weighted rare-variants TDT |
| RVtests |
Rare Variant Tests |
| Rwave |
Time-Frequency Analysis of 1-D Signals |
| rWBclimate |
A package for accessing World Bank climate data |
| RWBP |
Detects spatial outliers using a Random Walk on Bipartite Graph |
| RWebLogo |
plotting custom sequence logos |
| RWeka |
R/Weka Interface |
| RWekajars |
R/Weka Interface Jars |
| rwfec |
R Wireless, Forward Error Correction |
| RWiener |
Wiener process distribution functions |
| RWinEdt |
R Interface to WinEdt |
| Rwinsteps |
Running Winsteps in R |
| rwirelesscom |
Basic Wireless Communications Simulation |
| rworldmap |
Mapping Global Data |
| rworldxtra |
Country boundaries at high resolution |
| rwt |
Rice Wavelet Toolbox wrapper |
| rwty |
R We There Yet? Visualizing MCMC Convergence in Phylogenetics |
| rwunderground |
R Interface to Weather Underground API |
| RxCEcolInf |
R x C Ecological Inference With Optional Incorporation of Survey Information |
| RXKCD |
Get XKCD comic from R |
| RXMCDA |
Functions to Parse and Create XMCDA Files |
| RxnSim |
Functions to Compute Chemical Reaction Similarity |
| RxODE |
Facilities for Simulating from ODE-Based Models |
| RXshrink |
Maximum Likelihood Shrinkage via Generalized Ridge or Least Angle Regression |
| Ryacas |
R Interface to the Yacas Computer Algebra System |
| RYandexTranslate |
R Interface to Yandex Translate API |
| RYoudaoTranslate |
R package provide functions to translate English words into Chinese |
| ryouready |
Companion to the Forthcoming Book - R you Ready? |
| rYoutheria |
Access to the YouTheria Mammal Trait Database |
| rysgran |
Grain size analysis, textural classifications and distribution of unconsolidated sediments |
| Rz |
GUI Tool for Data Management like SPSS or Stata |
| RZabbix |
R Module for Working with the 'Zabbix API' |
| rzmq |
R Bindings for ZeroMQ |