| l0ara |
Sparse Generalized Linear Model with L0 Approximation for Feature Selection |
| L1pack |
Routines for L1 Estimation |
| l2boost |
l2boost - Friedman's boosting algorithm for regularized linear regression |
| labdsv |
Ordination and Multivariate Analysis for Ecology |
| labeledLoop |
Labeled Loop |
| labeling |
Axis Labeling |
| labelled |
Manipulating Labelled Data |
| labelrank |
Predicting Rankings of Labels |
| label.switching |
Relabelling MCMC Outputs of Mixture Models |
| labeltodendro |
Convert labels or tables to a dendrogram |
| labstatR |
Libreria Del Laboratorio Di Statistica Con R |
| labstats |
Data Sets for the Book "Experimental Design for Laboratory Biologists" |
| laeken |
Estimation of indicators on social exclusion and poverty |
| laercio |
Duncan test, Tukey test and Scott-Knott test |
| LaF |
Fast access to large ASCII files |
| laGP |
Local Approximate Gaussian Process Regression |
| Lahman |
Sean Lahman's Baseball Database |
| LakeMetabolizer |
Tools for the Analysis of Ecosystem Metabolism |
| lakemorpho |
Lake Morphometry Metrics in R |
| laketemps |
Lake Temperatures Collected by Situ and Satellite Methods from 1985-2009 |
| Lambda4 |
Collection of Internal Consistency Reliability Coefficients |
| lambda.r |
Modeling Data with Functional Programming |
| lambda.tools |
Tools for Modeling Data with Functional Programming |
| LambertW |
Probabilistic Models to Analyze and Gaussianize Heavy-Tailed, Skewed Data |
| lamW |
Lambert-W Function |
| LANDD |
Liquid Association for Network Dynamics Detection |
| landest |
Landmark Estimation of Survival and Treatment Effect |
| landpred |
Landmark Prediction of a Survival Outcome |
| landsat |
Radiometric and topographic correction of satellite imagery |
| landsat8 |
Landsat 8 Imagery Rescaled to Reflectance, Radiance and/or Temperature |
| landscapeR |
Categorical Landscape Simulation Facility |
| Langevin |
Langevin Analysis in One and Two Dimensions |
| languageR |
Data sets and functions with "Analyzing Linguistic Data: A practical introduction to statistics" |
| LaplaceDeconv |
Laplace Deconvolution with Noisy Discrete Non-Equally Spaced Observations on a Finite Time Interval |
| LaplacesDemon |
Complete Environment for Bayesian Inference |
| lar |
History of labour relations package |
| LARF |
Local Average Response Functions for Instrumental Variable Estimation of Treatment Effects |
| largeList |
Serialization Interface for Large List Objects |
| lars |
Least Angle Regression, Lasso and Forward Stagewise |
| laser |
Likelihood Analysis of Speciation/Extinction Rates from Phylogenies |
| lasso2 |
L1 constrained estimation aka ‘lasso’ |
| LassoBacktracking |
Modelling Interactions in High-Dimensional Data with Backtracking |
| lassoscore |
High-Dimensional Inference with the Penalized Score Test |
| lassoshooting |
L1 regularized regression (Lasso) solver using the Cyclic Coordinate Descent algorithm aka Lasso Shooting |
| lasvmR |
A Simple Wrapper for the LASVM Solver |
| latdiag |
Draws Diagrams Useful for Checking Latent Scales |
| latentnet |
Latent Position and Cluster Models for Statistical Networks |
| Laterality |
Functions to Calculate Common Laterality Statistics in Primatology |
| latex2exp |
Use LaTeX Expressions in Plots |
| lattice |
Trellis Graphics for R |
| latticeDensity |
Density estimation and nonparametric regression on irregular regions |
| latticeExtra |
Extra Graphical Utilities Based on Lattice |
| LatticeKrig |
Multiresolution Kriging Based on Markov Random Fields |
| lava |
Latent Variable Models |
| lavaan |
Latent Variable Analysis |
| lavaan.shiny |
Latent Variable Analysis with Shiny |
| lavaan.survey |
Complex Survey Structural Equation Modeling (SEM) |
| lava.tobit |
LVM with censored and binary outcomes |
| lawn |
Client for 'Turfjs' for 'Geospatial' Analysis |
| lawstat |
Tools for Biostatistics, Public Policy, and Law |
| lazy |
Lazy Learning for Local Regression |
| lazyData |
A LazyData Facility |
| lazyeval |
Lazy (Non-Standard) Evaluation |
| lazysql |
Lazy SQL Programming |
| lazyWeave |
LaTeX Wrappers for R Users |
| lba |
Latent Budget Analysis for Compositional Data |
| lbfgs |
Limited-memory BFGS Optimization |
| lbfgsb3 |
Limited Memory BFGS Minimizer with Bounds on Parameters |
| lbiassurv |
Length-biased correction to survival curve estimation |
| LCA |
Localised Co-Dependency Analysis |
| LCAextend |
Latent Class Analysis (LCA) with familial dependence in extended pedigrees |
| lcda |
Latent Class Discriminant Analysis |
| LCFdata |
Data sets for package “LMERConvenienceFunctions” |
| LCMCR |
Bayesian Nonparametric Latent-Class Capture-Recapture |
| lcmm |
Extended Mixed Models Using Latent Classes and Latent Processes |
| lcopula |
Liouville Copulas |
| lctools |
Local Correlation, Spatial Inequalities, Geographically Weighted Regression and Other Tools |
| lda |
Collapsed Gibbs Sampling Methods for Topic Models |
| ldamatch |
Selection of Statistically Similar Research Groups |
| ldatuning |
Tuning of the LDA Models Parameters |
| LDAvis |
Interactive Visualization of Topic Models |
| ldbounds |
Lan-DeMets Method for Group Sequential Boundaries |
| LDcorSV |
Linkage disequilibrium corrected by the structure and the relatedness |
| LDheatmap |
Graphical display of pairwise linkage disequilibria between SNPs |
| ldlasso |
LD LASSO Regression for SNP Association Study |
| LDOD |
Finding Locally D-optimal optimal designs for some nonlinear and generalized linear models |
| LDPD |
Probability of Default Calibration |
| ldr |
Methods for likelihood-based dimension reduction in regression |
| LDRTools |
Tools for Linear Dimension Reduction |
| LDtests |
Exact tests for Linkage Disequilibrium and Hardy-Weinberg Equilibrium |
| leaderCluster |
Leader Clustering Algorithm |
| LeafAngle |
Analysis and Visualization of Plant Leaf Angle Distributions |
| LeafArea |
Rapid Digital Image Analysis of Leaf Area |
| leaflet |
Create Interactive Web Maps with the JavaScript 'Leaflet' Library |
| leafletR |
Interactive Web-Maps Based on the Leaflet JavaScript Library |
| LEAP |
Constructing Gene Co-Expression Networks for Single-Cell RNA-Sequencing Data Using Pseudotime Ordering |
| LEAPFrOG |
Likelihood Estimation of Admixture in Parents From Offspring Genotypes |
| leapp |
latent effect adjustment after primary projection |
| leaps |
regression subset selection |
| LearnBayes |
Functions for Learning Bayesian Inference |
| learningr |
Data and functions to accompany the book "Learning R" |
| learNN |
Examples of Neural Networks |
| learnstats |
An Interactive Environment for Learning Statistics |
| lefse |
Phylogenetic and Functional Analyses for Ecology |
| leiv |
Bivariate Linear Errors-In-Variables Estimation |
| LeLogicielR |
Functions and datasets to accompany the book "Le logiciel R: Maitriser le langage, Effectuer des analyses statistiques" (french) |
| lessR |
Less Code, More Results |
| lestat |
A package for LEarning STATistics |
| letsR |
Tools for Data Handling and Analysis in Macroecology |
| lettercase |
Utilities for Formatting Strings with Consistent Capitalization, Word Breaks and White Space |
| LexisPlotR |
Plot Lexis Diagrams for Demographic Purposes |
| lfactors |
Factors with Levels |
| lfda |
Local Fisher Discriminant Analysis |
| LFDR.MLE |
Estimation of the Local False Discovery Rates by Type II Maximum Likelihood Estimation |
| lfe |
Linear Group Fixed Effects |
| lfl |
Linguistic Fuzzy Logic |
| lfstat |
Calculation of Low Flow Statistics for Daily Stream Flow Data |
| lga |
Tools for linear grouping analysis (LGA) |
| lgarch |
Simulation and Estimation of Log-GARCH Models |
| lgcp |
Log-Gaussian Cox Process |
| LGEWIS |
Tests for Genetic Association/Gene-Environment Interaction in Longitudinal Gene-Environment-Wide Interaction Studies |
| LGRF |
Set-Based Tests for Genetic Association in Longitudinal Studies |
| lgtdl |
A set of methods for longitudinal data objects |
| lhs |
Latin Hypercube Samples |
| libamtrack |
Computational Routines for Proton and Ion Radiotherapy |
| LiblineaR |
Linear Predictive Models Based on the LIBLINEAR C/C++ Library |
| LiblineaR.ACF |
Linear Classification with Online Adaptation of Coordinate Frequencies |
| Libra |
Linearized Bregman Algorithms for Generalized Linear Models |
| LICORS |
Light Cone Reconstruction of States - Predictive State Estimation From Spatio-Temporal Data |
| LICurvature |
Sensitivity Analysis for Case Weight in Normal Linear Regression |
| lifecontingencies |
Financial and Actuarial Mathematics for Life Contingencies |
| lifecourse |
Quantification of Lifecourse Fluidity |
| LifeHist |
Life History Models of Individuals |
| LifeTables |
Two-Parameter HMD Model Life Table System |
| lift |
Compute the Top Decile Lift and Plot the Lift Curve |
| liftr |
Dockerize R Markdown Documents |
| LightningR |
Tools for Communication with Lightning-Viz Server |
| lightsout |
Implementation of the 'Lights Out' Puzzle Game |
| LIHNPSD |
Poisson Subordinated Distribution |
| likelihood |
Methods for Maximum Likelihood Estimation |
| likelihoodAsy |
Functions for Likelihood Asymptotics |
| likeLTD |
Tools to Evaluate DNA Profile Evidence |
| likert |
Functions to Analyze and Visualize Likert Type Items |
| LIM |
Linear Inverse Model examples and solution methods |
| limitplot |
Jitter/CI Plot with Ordered Points Below the Limit of Detection |
| limSolve |
Solving Linear Inverse Models |
| linbin |
Binning and Plotting of Linearly Referenced Data |
| LinCal |
Static Univariate Frequentist and Bayesian Linear Calibration |
| LindenmayeR |
Functions to Explore L-Systems (Lindenmayer Systems) |
| LindleyR |
The Lindley Distribution and Its Modifications |
| LinearizedSVR |
Linearized Support Vector Regression |
| LinearRegressionMDE |
Minimum Distance Estimation in Linear Regression Model |
| linear.tools |
Manipulate Formulas and Evaluate Marginal Effects |
| linERR |
Linear Excess Relative Risk Model |
| lineup |
Lining Up Two Sets of Measurements |
| linkcomm |
Tools for Generating, Visualizing, and Analysing Link Communities in Networks |
| LinkedMatrix |
Column-Linked and Row-Linked Matrices |
| linkim |
Linkage information based genotype imputation method |
| linkR |
3D Lever and Linkage Mechanism Modeling |
| linLIR |
linear Likelihood-based Imprecise Regression |
| linprog |
Linear Programming / Optimization |
| LinRegInteractive |
Interactive Interpretation of Linear Regression Models |
| LINselect |
Selection of Linear Estimators |
| lint |
Tools to check R code style |
| lintools |
Manipulation of Linear Systems of (in)Equalities |
| lintr |
Static R Code Analysis |
| lira |
LInear Regression in Astronomy |
| liso |
Fitting lasso penalised additive isotone models |
| lisp |
List-processing à la SRFI-1 |
| lisrelToR |
Import output from LISREL into R |
| list |
Statistical Methods for the Item Count Technique and List Experiment |
| listenv |
Environments Behaving (Almost) as Lists |
| LIStest |
Tests of independence based on the Longest Increasing Subsequence |
| listviewer |
'htmlwidget' for Interactive Views of R Lists |
| listWithDefaults |
List with Defaults |
| littler |
R at the Command-Line via 'r' |
| livechatR |
R Wrapper for LiveChat REST API |
| ljr |
Logistic Joinpoint Regression |
| llama |
Leveraging Learning to Automatically Manage Algorithms |
| lle |
Locally linear embedding |
| lllcrc |
Local Log-linear Models for Capture-Recapture |
| LLSR |
Data Analysis of Liquid-Liquid Systems |
| lm.beta |
Add Standardized Regression Coefficients to lm-Objects |
| lm.br |
Linear Model with Breakpoint |
| lme4 |
Linear Mixed-Effects Models using 'Eigen' and S4 |
| lmec |
Linear Mixed-Effects Models with Censored Responses |
| lmem.gwaser |
Linear Mixed Effects Models for Genome-Wide Association Studies |
| lmem.qtler |
Linear Mixed Effects Models for QTL Mapping for Multienvironment and Multitrait Analysis |
| lmeNB |
Compute the Personalized Activity Index Based on a Negative Binomial Model |
| lmeNBBayes |
Compute the Personalized Activity Index Based on a Flexible Bayesian Negative Binomial Model |
| lmenssp |
Linear Mixed Effects Models with Non-Stationary Stochastic Processes |
| LMERConvenienceFunctions |
Model Selection and Post-hoc Analysis for (G)LMER Models |
| lmeresampler |
Bootstrap Methods for Nested Linear Mixed-Effects Models |
| lmerTest |
Tests in Linear Mixed Effects Models |
| lmeSplines |
Add smoothing spline modelling capability to nlme |
| LMest |
Latent Markov Models with and without Covariates |
| lmeVarComp |
Testing for a subset of variance components in linear mixed models |
| lmf |
Functions for estimation and inference of selection in age-structured populations |
| lmfor |
Functions for Forest Biometrics |
| lmm |
Linear Mixed Models |
| lmmlasso |
Linear mixed-effects models with Lasso |
| lmmot |
Multiple Ordinal Tobit (MOT) Model |
| lmms |
Linear Mixed Effect Model Splines for Modelling and Analysis of Time Course Data |
| lmodel2 |
Model II Regression |
| lmom |
L-moments |
| lmomco |
L-Moments, Censored L-Moments, Trimmed L-Moments, L-Comoments, and Many Distributions |
| Lmoments |
L-Moments and Quantile Mixtures |
| lmomRFA |
Regional frequency analysis using L-moments |
| lmSupport |
Support for Linear Models |
| lmtest |
Testing Linear Regression Models |
| LncMod |
Predicting Modulator and Functional/Survival Analysis |
| LncPath |
Identifying the Pathways Regulated by LncRNA Sets of Interest |
| LncPriCNet |
Prioritizing Candidate LncRNAs Based on a Composite Multi-Level Network |
| loa |
Lattice Options and Add-Ins |
| localdepth |
Local Depth |
| localgauss |
Estimating Local Gaussian Parameters |
| localsolver |
R API to LocalSolver |
| locfdr |
Computes Local False Discovery Rates |
| LocFDRPois |
Functions for Performing Local FDR Estimation when Null and Alternative are Poisson |
| locfit |
Local Regression, Likelihood and Density Estimation |
| locits |
Test of Stationarity and Localized Autocovariance |
| Lock5Data |
Datasets for "Statistics: UnLocking the Power of Data" |
| Lock5withR |
Datasets for 'Statistics: Unlocking the Power of Data' |
| locpol |
Kernel local polynomial regression |
| lodGWAS |
Genome-Wide Association Analysis of a Biomarker Accounting for Limit of Detection |
| loe |
Local Ordinal Embedding |
| log4r |
A simple logging system for R, based on log4j |
| logbin |
Relative Risk Regression Using the Log-Binomial Model |
| LogConcDEAD |
Log-concave Density Estimation in Arbitrary Dimensions |
| logconcens |
Maximum likelihood estimation of a log-concave density based on censored data |
| logcondens |
Estimate a Log-Concave Probability Density from Iid Observations |
| logcondens.mode |
Compute MLE of Log-Concave Density on R with Fixed Mode, and Perform Inference for the Mode |
| logcondiscr |
Estimate a Log-Concave Probability Mass Function from Discrete i.i.d. Observations |
| logconPH |
CoxPH Model with Log Concave Baseline Distribution |
| logging |
R logging package |
| LogicForest |
Logic Forest |
| LOGICOIL |
LOGICOIL: multi-state prediction of coiled-coil oligomeric state |
| LogicOpt |
Truth Table Logic Optimizer |
| LogicReg |
Logic Regression |
| logistf |
Firth's bias reduced logistic regression |
| LogisticDx |
Diagnostic Tests for Models with a Binomial Response |
| logisticPCA |
Binary Dimensionality Reduction |
| LOGIT |
Functions, Data and Code for Binary and Binomial Data |
| logitchoice |
Fitting l2-regularized logit choice models via generalized gradient descent |
| LogitNet |
Infer network based on binary arrays using regularized logistic regression |
| logitnorm |
Functions for the logitnormal distribution |
| loglognorm |
Double log normal distribution functions |
| logmult |
Log-Multiplicative Models, Including Association Models |
| LogrankA |
Logrank Test for Aggregated Survival Data |
| logspline |
Logspline Density Estimation Routines |
| lokern |
Kernel Regression Smoothing with Local or Global Plug-in Bandwidth |
| lomb |
Lomb-Scargle Periodogram |
| longCatEDA |
Package for Plotting Categorical Longitudinal and Time-Series Data |
| longclust |
Model-Based Clustering and Classification for Longitudinal Data |
| longitudinal |
Analysis of Multiple Time Course Data |
| longitudinalData |
Longitudinal Data |
| longmemo |
Statistics for Long-Memory Processes (Jan Beran) – Data and Functions |
| longpower |
Sample Size Calculations for Longitudinal Data |
| longurl |
Expand Short URLs Using the 'LongURL' API |
| loo |
Efficient Leave-One-Out Cross-Validation and WAIC for Bayesian Models |
| lookupTable |
Look-Up Tables using S4 |
| loop |
loop decomposition of weighted directed graphs for life cycle analysis, providing flexbile network plotting methods, and analyzing food chain properties in ecology |
| LoopAnalyst |
A Collection of Tools to Conduct Levins' Loop Analysis |
| loopr |
Uses an Archive to Amend Previous Stages of a Pipe using Current Output |
| lordif |
Logistic Ordinal Regression Differential Item Functioning using IRT |
| lorec |
LOw Rand and sparsE Covariance matrix estimation |
| LOST |
Missing Morphometric Data Simulation and Estimation |
| LotkasLaw |
Runs Lotka's Law which is One of the Special Applications of Zipf's Law |
| LowRankQP |
Low Rank Quadratic Programming |
| lpbrim |
LP-BRIM Bipartite Modularity |
| lpc |
Lassoed principal components for testing significance of features |
| LPCM |
Local Principal Curve Methods |
| lpint |
Local polynomial estimators of intensity function or its derivatives |
| LPM |
Linear Parametric Models Applied to Hydrological Series |
| lpme |
Local Polynomial Estimator in Measurement Error Models |
| LPmerge |
Merging linkage maps by linear programming |
| lpmodeler |
Modeler for linear programs (LP) and mixed integer linear programs (MILP) |
| LPR |
Lasso and Partial Ridge |
| lpridge |
Local Polynomial (Ridge) Regression |
| LPS |
Linear Predictor Score, for Binary Inference from Multiple Continuous Variables |
| lpSolve |
Interface to 'Lp_solve' v. 5.5 to Solve Linear/Integer Programs |
| lpSolveAPI |
R Interface to 'lp_solve' Version 5.5.2.0 |
| LPStimeSeries |
Learned Pattern Similarity and Representation for Time Series |
| LPTime |
LP Nonparametric Approach to Non-Gaussian Non-Linear Time Series Modelling |
| lqa |
Penalized Likelihood Inference for GLMs |
| lqmm |
Linear Quantile Mixed Models |
| lqr |
Robust Linear Quantile Regression |
| LRcontrast |
Dose Response Signal Detection under Model Uncertainty |
| lrequire |
Sources an R "Module" with Caching & Encapsulation, Returning Exported Vars |
| lrgs |
Linear Regression by Gibbs Sampling |
| lrmest |
Different Types of Estimators to Deal with Multicollinearity |
| LRTH |
A Likelihood Ratio Test Accounting for Genetic Heterogeneity |
| LS2W |
Locally stationary two-dimensional wavelet process estimation scheme |
| LS2Wstat |
A Multiscale Test of Spatial Stationarity for LS2W processes |
| lsa |
Latent Semantic Analysis |
| LSAfun |
Applied Latent Semantic Analysis (LSA) Functions |
| lsbclust |
Least-Squares Bilinear Clustering for Three-Way Data |
| LSC |
Local Statistical Complexity - Automatic Pattern Discovery in Spatio-Temporal Data |
| LSD |
Lots of Superior Depictions |
| LSDinterface |
Reading LSD Results (.res) Files |
| lsdv |
Least square dummy variable regression |
| lsei |
Solving Least Squares Problems under Equality/Inequality Constraints |
| lsgl |
Linear Sparse Group Lasso |
| lshorth |
The Length of the Shorth |
| lsl |
Latent Structure Learning |
| lsmeans |
Least-Squares Means |
| LSMonteCarlo |
American options pricing with Least Squares Monte Carlo method |
| LSPFP |
Lysate and Secretome Peptide Feature Plotter |
| lspls |
LS-PLS Models |
| lsr |
Companion to "Learning Statistics with R" |
| lss |
the accelerated failure time model to right censored data based on least-squares principle |
| LSTS |
Locally Stationary Time Series |
| ltbayes |
Simulation-Based Bayesian Inference for Latent Traits of Item Response Models |
| ltm |
Latent Trait Models under IRT |
| ltmle |
Longitudinal Targeted Maximum Likelihood Estimation |
| LTPDvar |
LTPD and AOQL Plans for Acceptance Sampling Inspection by Variables |
| LTR |
Perform LTR analysis on microarray data |
| LTRCtrees |
Survival Trees to Fit Left-Truncated and Right-Censored Survival Data |
| ltsa |
Linear Time Series Analysis |
| ltsbase |
Ridge and Liu Estimates based on LTS (Least Trimmed Squares) Method |
| ltsk |
Local Time Space Kriging |
| lubridate |
Make Dealing with Dates a Little Easier |
| luca |
Likelihood inference from case-control data Under Covariate Assumptions (LUCA) |
| lucid |
Printing Floating Point Numbers in a Human-Friendly Format |
| lucr |
Currency Formatting and Conversion |
| lulcc |
Land Use Change Modelling in R |
| lumendb |
Lumen Database API Client |
| Luminescence |
Comprehensive Luminescence Dating Data Analysis |
| lunar |
Lunar Phase & Distance, Seasons and Other Environmental Factors |
| luzlogr |
Lightweight Logging for R Scripts |
| lvm4net |
Latent Variable Models for Networks |
| LVMMCOR |
A Latent Variable Model for Mixed Continuous and Ordinal Responses |
| lvplot |
Letter Value 'Boxplots' |
| LW1949 |
An Automated Approach to Evaluating Dose-Effect Experiments Following Litchfield and Wilcoxon (1949) |
| lxb |
Fast LXB File Reader |
| lymphclon |
Accurate Estimation of Clonal Coincidences and Abundances from Biological Replicates |