A3 |
Accurate, Adaptable, and Accessible Error Metrics for Predictive Models |
abbyyR |
Access to Abbyy Optical Character Recognition (OCR) API |
abc |
Tools for Approximate Bayesian Computation (ABC) |
ABCanalysis |
Computed ABC Analysis |
abc.data |
Data Only: Tools for Approximate Bayesian Computation (ABC) |
abcdeFBA |
ABCDE_FBA: A-Biologist-Can-Do-Everything of Flux Balance Analysis with this package |
ABCoptim |
Implementation of Artificial Bee Colony (ABC) Optimization |
ABCp2 |
Approximate Bayesian Computational Model for Estimating P2 |
abcrf |
Approximate Bayesian Computation via Random Forests |
abctools |
Tools for ABC Analyses |
abd |
The Analysis of Biological Data |
abf2 |
Load Gap-Free Axon ABF2 Files |
ABHgenotypeR |
Easy Visualization of ABH Genotypes |
abind |
Combine Multidimensional Arrays |
abn |
Modelling Multivariate Data with Additive Bayesian Networks |
abodOutlier |
Angle-Based Outlier Detection |
AbsFilterGSEA |
Improved False Positive Control of Gene-Permuting GSEA with Absolute Filtering |
abundant |
Abundant regression and high-dimensional principal fitted components |
ACA |
Abrupt Change-Point or Aberration Detection in Point Series |
acc |
Functions for Processing and Analyzing Accelerometer Data |
accelerometry |
Functions for Processing Minute-to-Minute Accelerometer Data |
accelmissing |
Missing Value Imputation for Accelerometer Data |
AcceptanceSampling |
Creation and Evaluation of Acceptance Sampling Plans |
ACCLMA |
ACC & LMA Graph Plotting |
accrual |
Bayesian Accrual Prediction |
accrued |
Data Quality Visualization Tools for Partially Accruing Data |
ACD |
Categorical data analysis with complete or missing responses |
ACDm |
Tools for Autoregressive Conditional Duration Models |
acepack |
ace() and avas() for selecting regression transformations |
ACEt |
Estimating Dynamic Heritability and Twin Model Comparison |
acid |
Analysing Conditional Income Distributions |
acm4r |
Align-and-Count Method comparisons of RFLP data |
acmeR |
Implements ACME Estimator of Bird and Bat Mortality by Wind Turbines |
ACNE |
Affymetrix SNP Probe-Summarization using Non-Negative Matrix Factorization |
acnr |
Annotated Copy-Number Regions |
acopula |
Modelling dependence with multivariate Archimax (or any user-defined continuous) copulas |
acp |
Autoregressive Conditional Poisson |
aCRM |
Convenience functions for analytical Customer Relationship Management |
acs |
Download, Manipulate, and Present American Community Survey and Decennial Data from the US Census |
ACSNMineR |
Gene Enrichment Analysis from ACSN Maps or GMT Files |
acss |
Algorithmic Complexity for Short Strings |
acss.data |
Data Only: Algorithmic Complexity of Short Strings (Computed via Coding Theorem Method) |
ACSWR |
A Companion Package for the Book "A Course in Statistics with R" |
ACTCD |
Asymptotic Classification Theory for Cognitive Diagnosis |
Actigraphy |
Actigraphy Data Analysis |
activity |
Animal Activity Statistics |
activpalProcessing |
Process activPAL Events Files |
actuar |
Actuarial Functions and Heavy Tailed Distributions |
ActuDistns |
Functions for actuarial scientists |
ada |
The R Package Ada for Stochastic Boosting |
adabag |
Applies Multiclass AdaBoost.M1, SAMME and Bagging |
adagio |
Discrete and Global Optimization Routines |
AdapEnetClass |
A Class of Adaptive Elastic Net Methods for Censored Data |
adaptDA |
Adaptive Mixture Discriminant Analysis |
AdaptFit |
Adaptive Semiparametic Regression |
AdaptFitOS |
Adaptive Semiparametric Regression with Simultaneous Confidence Bands |
AdaptGauss |
Gaussian Mixture Models (GMM) |
AdaptiveSparsity |
Adaptive Sparsity Models |
adaptivetau |
Tau-leaping stochastic simulation |
adaptMCMC |
Implementation of a generic adaptive Monte Carlo Markov Chain sampler |
adaptsmoFMRI |
Adaptive Smoothing of FMRI Data |
adaptTest |
Adaptive two-stage tests |
addhaz |
Binomial and Multinomial Additive Hazards Models |
addhazard |
Fit Additive Hazards Models for Survival Analysis |
addinslist |
Discover and Install Useful RStudio Addins |
additivityTests |
Additivity Tests in the Two Way Anova with Single Sub-class Numbers |
addreg |
Additive Regression for Discrete Data |
ADDT |
A Package for Analysis of Accelerated Destructive Degradation Test Data |
ade4 |
Analysis of Ecological Data : Exploratory and Euclidean Methods in Environmental Sciences |
ade4TkGUI |
'ade4' Tcl/Tk Graphical User Interface |
adegenet |
Exploratory Analysis of Genetic and Genomic Data |
adegraphics |
An S4 Lattice-Based Package for the Representation of Multivariate Data |
adehabitat |
Analysis of Habitat Selection by Animals |
adehabitatHR |
Home Range Estimation |
adehabitatHS |
Analysis of Habitat Selection by Animals |
adehabitatLT |
Analysis of Animal Movements |
adehabitatMA |
Tools to Deal with Raster Maps |
adephylo |
adephylo: exploratory analyses for the phylogenetic comparative method |
AdequacyModel |
Adequacy of Probabilistic Models and General Purpose Optimization |
adespatial |
Multivariate Multiscale Spatial Analysis |
ADGofTest |
Anderson-Darling GoF test |
adhoc |
calculate ad hoc distance thresholds for DNA barcoding identification |
adimpro |
Adaptive Smoothing of Digital Images |
adlift |
An adaptive lifting scheme algorithm |
ADM3 |
An Interpretation of the ADM method - automated detection algorithm |
AdMit |
Adaptive Mixture of Student-t distributions |
admixturegraph |
Admixture Graph Manipulation and Fitting |
ADMMnet |
Regularized Model with Selecting the Number of Non-Zeros |
ADPclust |
Fast Clustering Using Adaptive Density Peak Detection |
ads |
Spatial point patterns analysis |
AdvBinomApps |
Upper Clopper-Pearson Confidence Limits for Burn-in Studies under Additional Available Information |
adwave |
Wavelet Analysis of Genomic Data from Admixed Populations |
AEDForecasting |
Change Point Analysis in ARIMA Forecasting |
aemo |
Download and process AEMO price and demand data |
AER |
Applied Econometrics with R |
AF |
Model-Based Estimation of Confounder-Adjusted Attributable Fractions |
afex |
Analysis of Factorial Experiments |
AFLPsim |
Hybrid Simulation and Genome Scan for Dominant Markers |
AFM |
Atomic Force Microscope Image Analysis |
after |
Run Code in the Background |
aftgee |
Accelerated Failure Time Model with Generalized Estimating Equations |
AGD |
Analysis of Growth Data |
AggregateR |
Aggregate Numeric, Date and Categorical Variables by an ID |
agop |
Aggregation Operators and Preordered Sets |
agRee |
Various Methods for Measuring Agreement |
Agreement |
Statistical Tools for Measuring Agreement |
agricolae |
Statistical Procedures for Agricultural Research |
agridat |
Agricultural Datasets |
agrmt |
Calculate Agreement or Consensus in Ordered Rating Scales |
AGSDest |
Estimation in Adaptive Group Sequential Trials |
agsemisc |
Miscellaneous plotting and utility functions |
ahaz |
Regularization for semiparametric additive hazards regression |
ahp |
Analytic Hierarchy Process |
AHR |
Estimation and Testing of Average Hazard Ratios |
AICcmodavg |
Model Selection and Multimodel Inference Based on (Q)AIC(c) |
AID |
Estimation of Box-Cox Power Transformation Parameter |
aidar |
Tools for reading AIDA (http://aida.freehep.org/) files into R |
AIM |
AIM: adaptive index model |
aimPlot |
Create Pie Like Plot for Completeness |
Ake |
Associated Kernel Estimations |
akima |
Interpolation of Irregularly and Regularly Spaced Data |
akmeans |
Adaptive Kmeans algorithm based on threshold |
alabama |
Constrained Nonlinear Optimization |
alakazam |
Immunoglobulin Clonal Lineage and Diversity Analysis |
ald |
The Asymmetric Laplace Distribution |
ALDqr |
Quantile Regression Using Asymmetric Laplace Distribution |
aLFQ |
Estimating Absolute Protein Quantities from Label-Free LC-MS/MS Proteomics Data |
AlgDesign |
Algorithmic Experimental Design |
AlgebraicHaploPackage |
Haplotype Two Snips Out of a Paired Group of Patients |
algstat |
Algebraic statistics in R |
AlignStat |
Comparison of Alternative Multiple Sequence Alignments |
alineR |
Alignment of Phonetic Sequences Using the 'ALINE' Algorithm |
ALKr |
Generate Age-Length Keys for fish populations |
allan |
Automated Large Linear Analysis Node |
allanvar |
Allan Variance Analysis |
alleHap |
Allele Imputation and Haplotype Reconstruction from Pedigree Databases |
allelematch |
Identifying unique multilocus genotypes where genotyping error and missing data may be present |
AlleleRetain |
Allele Retention, Inbreeding, and Demography |
allelic |
A fast, unbiased and exact allelic exact test |
AllPossibleSpellings |
Computes all of a word's possible spellings |
alm |
R Client for the Lagotto Altmetrics Platform |
alphahull |
Generalization of the Convex Hull of a Sample of Points in the Plane |
alphaOutlier |
Obtain Alpha-Outlier Regions for Well-Known Probability Distributions |
alphashape3d |
Implementation of the 3D Alpha-Shape for the Reconstruction of 3D Sets from a Point Cloud |
alr3 |
Data to accompany Applied Linear Regression 3rd edition |
alr4 |
Data to accompany Applied Linear Regression 4rd edition |
ALS |
Multivariate Curve Resolution Alternating Least Squares (MCR-ALS) |
ALSCPC |
Accelerated line search algorithm for simultaneous orthogonal transformation of several positive definite symmetric matrices to nearly diagonal form |
altmeta |
Alternative Meta-Analysis Methods |
ALTopt |
Optimal Experimental Designs for Accelerated Life Testing |
amap |
Another Multidimensional Analysis Package |
AMAP.Seq |
Compare Gene Expressions from 2-Treatment RNA-Seq Experiments |
AMCP |
A Multiple Comparison Perspective |
ameco |
European Commission Annual Macro-Economic (AMECO) Database |
amei |
Adaptive Management of Epidemiological Interventions |
Amelia |
A Program for Missing Data |
amen |
Additive and Multiplicative Effects Models for Networks and Relational Data |
AmericanCallOpt |
This package includes pricing function for selected American call options with underlying assets that generate payouts |
AMGET |
Post-processing tool for ADAPT 5 |
aml |
Adaptive Mixed LASSO |
AMOEBA |
A Multidirectional Optimum Ecotope-Based Algorithm |
AMORE |
A MORE flexible neural network package |
AmostraBrasil |
Generates Samples or Complete List of Brazilian IBGE (Instituto Brasileiro De Geografia e Estatistica) Census Households, Geocoding it by Google Maps |
AmpliconDuo |
Statistical Analysis of Amplicon Data of the Same Sample to Identify Artefacts |
anacor |
Simple and Canonical Correspondence Analysis |
analogsea |
Interface to 'Digital Ocean' |
analogue |
Analogue and Weighted Averaging Methods for Palaeoecology |
analogueExtra |
Additional Functions for Use with the Analogue Package |
analyz |
Model Layer for Automatic Data Analysis via CSV File Interpretation |
AnalyzeFMRI |
Functions for analysis of fMRI datasets stored in the ANALYZE or NIFTI format |
AnalyzeTS |
Analyze (Fuzzy) Time Series |
anapuce |
Tools for microarray data analysis |
AncestryMapper |
Assigning Ancestry Based on Population References |
anchors |
Statistical analysis of surveys with anchoring vignettes |
AnDE |
An extended Bayesian Learning Technique developed by Dr. Geoff Webb |
andrews |
Andrews curves |
anesrake |
ANES Raking Implementation |
anfis |
Adaptive Neuro Fuzzy Inference System in R |
AnglerCreelSurveySimulation |
Simulate a Bus Route Creel Survey of Anglers |
animalTrack |
Animal track reconstruction for high frequency 2-dimensional (2D) or 3-dimensional (3D) movement data |
animation |
A Gallery of Animations in Statistics and Utilities to Create Animations |
anim.plots |
Simple Animated Plots For R |
ANLP |
Build Text Prediction Model |
AnnotLists |
AnnotLists: A tool to annotate multiple lists from a specific annotation file |
anoint |
Analysis of Interactions |
ANOM |
Analysis of Means |
anominate |
alpha-NOMINATE Ideal Point Estimator |
anonymizer |
Anonymize Data Containing Personally Identifiable Information |
AntAngiCool |
AntiAngiogenic |
AnthropMMD |
A GUI for Mean Measures of Divergence |
Anthropometry |
Statistical Methods for Anthropometric Data |
antitrust |
Tools for Antitrust Practitioners |
AntWeb |
programmatic interface to the AntWeb |
aod |
Analysis of Overdispersed Data |
aods3 |
Analysis of Overdispersed Data using S3 methods |
aoos |
Another Object Orientation System |
aop |
Adverse Outcome Pathway Analysis |
aoristic |
aoristic analysis with spatial output (kml) |
ApacheLogProcessor |
Process the Apache Web Server Log Combined Files |
apaStyle |
Generate APA Tables for MS Word |
apaTables |
Create American Psychological Association (APA) Style Tables |
apc |
Age-Period-Cohort Analysis |
apcluster |
Affinity Propagation Clustering |
ape |
Analyses of Phylogenetics and Evolution |
apex |
Phylogenetic Methods for Multiple Gene Data |
aplore3 |
Datasets from Hosmer, Lemeshow and Sturdivant, "Applied Logistic Regression" (3rd ed.) |
aplpack |
Another Plot PACKage: stem.leaf, bagplot, faces, spin3R, plotsummary, plothulls, and some slider functions |
apmsWAPP |
Pre- and Postprocessing for AP-MS data analysis based on spectral counts |
appell |
Compute Appell's F1 hypergeometric function |
apple |
Approximate Path for Penalized Likelihood Estimators |
AppliedPredictiveModeling |
Functions and Data Sets for 'Applied Predictive Modeling' |
appnn |
Amyloid Propensity Prediction Neural Network |
approximator |
Bayesian prediction of complex computer codes |
aprean3 |
Datasets from Draper and Smith "Applied Regression Analysis" (3rd Ed., 1998) |
apricom |
Tools for the a Priori Comparison of Regression Modelling Strategies |
aprof |
Amdahl's Profiler, Directed Optimization Made Easy |
APSIM |
General Utility Functions for the 'Agricultural Production Systems Simulator' |
APSIMBatch |
Analysis the output of Apsim software |
apsimr |
Edit, Run and Evaluate APSIM Simulations Easily Using R |
apsrtable |
apsrtable model-output formatter for social science |
apt |
Asymmetric Price Transmission |
APtools |
Average Positive Predictive Values (AP) for Binary Outcomes and Censored Event Times |
apTreeshape |
Analyses of Phylogenetic Treeshape |
aqfig |
Functions to help display air quality model output and monitoring data |
aqp |
Algorithms for Quantitative Pedology |
aqr |
Interface methods to use with an ActiveQuant Master Server |
AquaEnv |
AquaEnv - an integrated development toolbox for aquatic chemical model generation |
AR1seg |
Segmentation of an autoregressive Gaussian process of order 1 |
arabicStemR |
Arabic Stemmer for Text Analysis |
ArArRedux |
Rigorous Data Reduction and Error Propagation of Ar40 / Ar39 Data |
ARCensReg |
Fitting Univariate Censored Linear Regression Model with Autoregressive Errors |
archdata |
Example Datasets from Archaeological Research |
archetypes |
Archetypal Analysis |
archiDART |
Plant Root System Architecture Analysis Using DART and RSML Files |
archivist |
Tools for Storing, Restoring and Searching for R Objects |
archivist.github |
Tools for Archiving, Managing and Sharing R Objects via GitHub |
ArDec |
Time series autoregressive-based decomposition |
arf3DS4 |
Activated Region Fitting, fMRI data analysis (3D) |
arfima |
Fractional ARIMA (and Other Long Memory) Time Series Modeling |
ArfimaMLM |
Arfima-MLM Estimation For Repeated Cross-Sectional Data |
argosfilter |
Argos locations filter |
argparse |
Command line optional and positional argument parser |
argparser |
Command-Line Argument Parser |
ArgumentCheck |
Improved Communication to Users with Respect to Problems in Function Arguments |
arm |
Data Analysis Using Regression and Multilevel/Hierarchical Models |
arnie |
"Arnie" box office records 1982-2014 |
aroma.affymetrix |
Analysis of Large Affymetrix Microarray Data Sets |
aroma.apd |
A Probe-Level Data File Format Used by 'aroma.affymetrix' [deprecated] |
aroma.cn |
Copy-Number Analysis of Large Microarray Data Sets |
aroma.core |
Core Methods and Classes Used by 'aroma.*' Packages Part of the Aroma Framework |
ARPobservation |
Tools for Simulating Direct Behavioral Observation Recording Procedures Based on Alternating Renewal Processes |
aRpsDCA |
Arps Decline Curve Analysis in R |
arrApply |
Apply a Function to a Margin of an Array |
ArrayBin |
Binarization of numeric data arrays |
arrayhelpers |
Convenience Functions for Arrays |
ars |
Adaptive Rejection Sampling |
ART |
Aligned Rank Transform for Nonparametric Factorial Analysis |
artfima |
ARTFIMA Model Estimation |
ARTIVA |
Time-Varying DBN Inference with the ARTIVA (Auto Regressive TIme VArying) Model |
ARTool |
Aligned Rank Transform |
ARTP |
Gene and Pathway p-values computed using the Adaptive Rank Truncated Product |
ARTP2 |
Pathway and Gene-Level Association Test |
arules |
Mining Association Rules and Frequent Itemsets |
arulesNBMiner |
Mining NB-Frequent Itemsets and NB-Precise Rules |
arulesSequences |
Mining Frequent Sequences |
arulesViz |
Visualizing Association Rules and Frequent Itemsets |
aRxiv |
Interface to the arXiv API |
asaur |
Data Sets for "Applied Survival Analysis Using R"" |
asbio |
A Collection of Statistical Tools for Biologists |
ascii |
Export R objects to several markup languages |
as.color |
Assign Random Colors to Unique Items in a Vector |
asd |
Simulations for Adaptive Seamless Designs |
asdreader |
Reading ASD Binary Files in R |
ash |
David Scott's ASH Routines |
asht |
Applied Statistical Hypothesis Tests |
AsioHeaders |
'Asio' C++ Header Files |
ASMap |
Linkage Map Construction using the MSTmap Algorithm |
asnipe |
Animal Social Network Inference and Permutations for Ecologists |
aspace |
A collection of functions for estimating centrographic statistics and computational geometries for spatial point patterns |
ASPBay |
Bayesian Inference on Causal Genetic Variants using Affected Sib-Pairs Data |
aspect |
A General Framework for Multivariate Analysis with Optimal Scaling |
aSPU |
Adaptive Sum of Powered Score Test |
asremlPlus |
Augments the Use of 'Asreml' in Fitting Mixed Models |
assertive |
Readable Check Functions to Ensure Code Integrity |
assertive.base |
A Lightweight Core of the 'assertive' Package |
assertive.code |
Assertions to Check Properties of Code |
assertive.data |
Assertions to Check Properties of Data |
assertive.data.uk |
Assertions to Check Properties of Strings |
assertive.data.us |
Assertions to Check Properties of Strings |
assertive.datetimes |
Assertions to Check Properties of Dates and Times |
assertive.files |
Assertions to Check Properties of Files |
assertive.matrices |
Assertions to Check Properties of Matrices |
assertive.models |
Assertions to Check Properties of Models |
assertive.numbers |
Assertions to Check Properties of Numbers |
assertive.properties |
Assertions to Check Properties of Variables |
assertive.reflection |
Assertions for Checking the State of R |
assertive.sets |
Assertions to Check Properties of Sets |
assertive.strings |
Assertions to Check Properties of Strings |
assertive.types |
Assertions to Check Types of Variables |
assertr |
Assertive Programming for R Analysis Pipelines |
assertthat |
Easy pre and post assertions |
AssetPricing |
Optimal pricing of assets with fixed expiry date |
assist |
A Suite of R Functions Implementing Spline Smoothing Techniques |
ASSISTant |
Adaptive Subgroup Selection in Group Sequential Trials |
AssocTests |
Genetic Association Studies |
assortnet |
Calculate the Assortativity Coefficient of Weighted and Binary Networks |
AssotesteR |
Statistical Tests for Genetic Association Studies |
aster |
Aster Models |
aster2 |
Aster Models |
astro |
Astronomy Functions, Tools and Routines |
astrochron |
A Computational Tool for Astrochronology |
astrodatR |
Astronomical Data |
astroFns |
Astronomy: time and position functions, misc. utilities |
astrolibR |
Astronomy Users Library |
astsa |
Applied Statistical Time Series Analysis |
asVPC |
Average Shifted Visual Predictive Checks |
asymLD |
Asymmetric Linkage Disequilibrium (ALD) for Polymorphic Genetic Data |
asymmetry |
The Slide-Vector Model for Multidimensional Scaling of Asymmetric Data |
asympTest |
Asymptotic statistic |
AsynchLong |
Regression Analysis of Sparse Asynchronous Longitudinal Data |
asypow |
Calculate Power Utilizing Asymptotic Likelihood Ratio Methods |
ATE |
Inference for Average Treatment Effects using Covariate Balancing |
AtelieR |
A GTK GUI for teaching basic concepts in statistical inference, and doing elementary bayesian tests |
atmcmc |
Automatically Tuned Markov Chain Monte Carlo |
ATmet |
Advanced Tools for Metrology |
AtmRay |
Acoustic Traveltime Calculations for 1-D Atmospheric Models |
aTSA |
Alternative Time Series Analysis |
atsd |
Support Querying Axibase Time-Series Database |
attribrisk |
Population Attributable Risk |
AUC |
Threshold independent performance measures for probabilistic classifiers |
aucm |
AUC Maximization |
AUCRF |
Variable Selection with Random Forest and the Area Under the Curve |
audio |
Audio Interface for R |
audiolyzR |
audiolyzR: Give your data a listen |
audit |
Bounds for Accounting Populations |
auRoc |
Various Methods to Estimate the AUC |
AUtests |
Approximate Unconditional and Permutation Tests |
autoencoder |
Sparse Autoencoder for Automatic Learning of Representative Features from Unlabeled Data |
autoimage |
Enhanced Image Plots |
automap |
Automatic interpolation package |
AutoModel |
Automated Hierarchical Multiple Regression with Assumptions Checking |
autopls |
Partial Least Squares Regression with Backward Selection of Predictors |
AutoregressionMDE |
Minimum Distance Estimation in Autoregressive Model |
AutoSEARCH |
General-to-Specific (GETS) Modelling |
autoSEM |
Performs Specification Search in Structural Equation Models |
autovarCore |
Automated Vector Autoregression Models and Networks |
averisk |
Calculation of Average Population Attributable Fractions and Confidence Intervals |
aws |
Adaptive Weights Smoothing |
aws.alexa |
Client for the Amazon Alexa Web Information Services API |
awsMethods |
Class and Methods Definitions for Packages 'aws', 'adimpro', 'fmri' and 'dti' |
aws.signature |
Amazon Web Services Request Signatures |
aylmer |
A generalization of Fisher's exact test |
AzureML |
Interface with Azure Machine Learning Datasets, Experiments and Web Services |