| B2Z |
Bayesian Two-Zone Model |
| b6e6rl |
Adaptive differential evolution, b6e6rl variant |
| babar |
Bayesian Bacterial Growth Curve Analysis in R |
| babel |
Ribosome Profiling Data Analysis |
| BaBooN |
Bayesian Bootstrap Predictive Mean Matching - Multiple and Single Imputation for Discrete Data |
| babynames |
US Baby Names 1880-2014 |
| BACA |
Bubble Chart to Compare Biological Annotations by using DAVID |
| BacArena |
Modeling Framework for Cellular Communities in their Environments |
| BACCO |
Bayesian Analysis of Computer Code Output (BACCO) |
| BACCT |
Bayesian Augmented Control for Clinical Trials |
| backblazer |
Bindings to the Backblaze B2 API |
| backpipe |
Backward Pipe Operator |
| backports |
Reimplementations of Functions Introduced Since R-3.0.0 |
| backShift |
Learning Causal Cyclic Graphs from Unknown Shift Interventions |
| backtest |
Exploring Portfolio-Based Conjectures About Financial Instruments |
| backtestGraphics |
Interactive Graphics for Portfolio Data |
| BACprior |
Choice of the Hyperparameter Omega in the Bayesian Adjustment for Confounding (BAC) Algorithm |
| bacr |
Bayesian Adjustment for Confounding |
| badgecreatr |
Create Badges for 'Travis', 'Repostatus' 'Codecov.io' Etc in Github Readme |
| BAEssd |
Bayesian Average Error approach to Sample Size Determination |
| Bagidis |
BAses GIving DIStances |
| bagRboostR |
Ensemble bagging and boosting classifiers |
| BalancedSampling |
Balanced and Spatially Balanced Sampling |
| BaM |
Functions and Datasets for Books by Jeff Gill |
| bamdit |
Bayesian Meta-Analysis of Diagnostic Test Data |
| BAMMtools |
Analysis and Visualization of Macroevolutionary Dynamics on Phylogenetic Trees |
| bandit |
Functions for simple A/B split test and multi-armed bandit analysis |
| BANFF |
Bayesian Network Feature Finder |
| BANOVA |
Hierarchical Bayesian ANOVA Models |
| bapred |
Batch Effect Removal and Addon Normalization (in Phenotype Prediction using Gene Data) |
| BaPreStoPro |
Bayesian Prediction of Stochastic Processes |
| barcode |
Barcode distribution plots |
| BarcodingR |
Species Identification using DNA Barcodes |
| Barnard |
Barnard's Unconditional Test |
| bartMachine |
Bayesian Additive Regression Trees |
| bartMachineJARs |
bartMachine JARs |
| BAS |
Bayesian Model Averaging using Bayesian Adaptive Sampling |
| base64 |
Base64 Encoder and Decoder |
| base64enc |
Tools for base64 encoding |
| basefun |
Infrastructure for Computing with Basis Functions |
| baseline |
Baseline Correction of Spectra |
| basicspace |
Recovering a Basic Space from Issue Scales |
| BASIX |
BASIX: An efficient C/C++ toolset for R |
| BaSTA |
Age-Specific Survival Analysis from Incomplete Capture-Recapture/Recovery Data |
| bastah |
Big Data Statistical Analysis for High-Dimensional Models |
| BAT |
Biodiversity Assessment Tools |
| batade |
HTML reports and so on |
| batch |
Batching Routines in Parallel and Passing Command-Line Arguments to R |
| BatchExperiments |
Statistical Experiments on Batch Computing Clusters |
| BatchJobs |
Batch Computing with R |
| batchmeans |
Consistent Batch Means Estimation of Monte Carlo Standard Errors |
| batman |
Convert Categorical Representations of Logicals to Actual Logicals |
| batteryreduction |
An R Package for Data Reduction by Battery Reduction |
| BayClone2 |
Bayesian Feature Allocation Model for Tumor Heterogeneity |
| BayesBD |
Bayesian Boundary Detection in Images |
| BayesBinMix |
Bayesian Estimation of Mixtures of Multivariate Bernoulli Distributions |
| bayesbio |
Miscellaneous Functions for Bioinformatics and Bayesian Statistics |
| bayesboot |
An Implementation of Rubin's (1981) Bayesian Bootstrap |
| BayesBridge |
Bridge Regression |
| BayesComm |
Bayesian Community Ecology Analysis |
| bayescount |
Power Calculations and Bayesian Analysis of Count Distributions and FECRT Data using MCMC |
| BayesCR |
Bayesian Analysis of Censored Regression Models Under Scale Mixture of Skew Normal Distributions |
| BayesDA |
Functions and Datasets for the book "Bayesian Data Analysis" |
| bayesDccGarch |
The Bayesian Dynamic Conditional Correlation GARCH Model |
| bayesDem |
Graphical User Interface for bayesTFR, bayesLife and bayesPop |
| BayesFactor |
Computation of Bayes Factors for Common Designs |
| bayesGARCH |
Bayesian Estimation of the GARCH(1,1) Model with Student-t Innovations |
| bayesGDS |
Scalable Rejection Sampling for Bayesian Hierarchical Models |
| BayesGESM |
Bayesian Analysis of Generalized Elliptical Semi-Parametric Models and Flexible Measurement Error Models |
| BayesH |
Bayesian Regression Model with Mixture of Two Scaled Inverse Chi Square as Hyperprior |
| BayesianAnimalTracker |
Bayesian Melding of GPS and DR Path for Animal Tracking |
| Bayesianbetareg |
Bayesian Beta regression: joint mean and precision modeling |
| BayesianNetwork |
Bayesian Network Modeling and Analysis |
| BayesLCA |
Bayesian Latent Class Analysis |
| bayesLife |
Bayesian Projection of Life Expectancy |
| BayesLogit |
Logistic Regression |
| bayesm |
Bayesian Inference for Marketing/Micro-Econometrics |
| BayesMAMS |
Designing Bayesian Multi-Arm Multi-Stage Studies |
| bayesMCClust |
Mixtures-of-Experts Markov Chain Clustering and Dirichlet Multinomial Clustering |
| BayesMed |
Default Bayesian Hypothesis Tests for Correlation, Partial Correlation, and Mediation |
| bayesmeta |
Bayesian Random-Effects Meta-Analysis |
| bayesmix |
Bayesian Mixture Models with JAGS |
| BayesMixSurv |
Bayesian Mixture Survival Models using Additive Mixture-of-Weibull Hazards, with Lasso Shrinkage and Stratification |
| BayesNI |
BayesNI: Bayesian Testing Procedure for Noninferiority with Binary Endpoints |
| bayesPop |
Probabilistic Population Projection |
| bayespref |
Hierarchical Bayesian analysis of ecological count data |
| bayesQR |
Bayesian quantile regression |
| bayess |
Bayesian Essentials with R |
| BayesSAE |
Bayesian Analysis of Small Area Estimation |
| BayesSingleSub |
Computation of Bayes factors for interrupted time-series designs |
| BayesSummaryStatLM |
MCMC Sampling of Bayesian Linear Models via Summary Statistics |
| bayesSurv |
Bayesian Survival Regression with Flexible Error and Random Effects Distributions |
| bayesTFR |
Bayesian Fertility Projection |
| Bayesthresh |
Bayesian thresholds mixed-effects models for categorical data |
| BayesTree |
Bayesian Additive Regression Trees |
| BayesTreePrior |
Bayesian Tree Prior Simulation |
| BayesValidate |
BayesValidate Package |
| BayesVarSel |
Bayes Factors, Model Choice and Variable Selection in Linear Models |
| BayesX |
R Utilities Accompanying the Software Package BayesX |
| BayesXsrc |
R Package Distribution of the BayesX C++ Sources |
| BayHap |
Bayesian analysis of haplotype association using Markov Chain Monte Carlo |
| BayHaz |
R Functions for Bayesian Hazard Rate Estimation |
| BaylorEdPsych |
R Package for Baylor University Educational Psychology Quantitative Courses |
| bayou |
Bayesian Fitting of Ornstein-Uhlenbeck Models to Phylogenies |
| BaySIC |
Bayesian Analysis of Significantly Mutated Genes in Cancer |
| BAYSTAR |
On Bayesian analysis of Threshold autoregressive model (BAYSTAR) |
| BB |
Solving and Optimizing Large-Scale Nonlinear Systems |
| bbefkr |
Bayesian bandwidth estimation and semi-metric selection for the functional kernel regression with unknown error density |
| bbemkr |
Bayesian bandwidth estimation for multivariate kernel regression with Gaussian error |
| BBEST |
Bayesian Estimation of Incoherent Neutron Scattering Backgrounds |
| BBmisc |
Miscellaneous Helper Functions for B. Bischl |
| bbmle |
Tools for General Maximum Likelihood Estimation |
| BBMM |
Brownian bridge movement model |
| bbo |
Biogeography-Based Optimization |
| BBRecapture |
Bayesian Behavioural Capture-Recapture Models |
| bc3net |
Gene Regulatory Network Inference with Bc3net |
| BCA |
Business and Customer Analytics |
| BCBCSF |
Bias-Corrected Bayesian Classification with Selected Features |
| BCDating |
Business Cycle Dating and Plotting Tools |
| BcDiag |
Diagnostics Plots for Bicluster Data |
| BCE |
Bayesian composition estimator: estimating sample (taxonomic) composition from biomarker data |
| BCEA |
Bayesian Cost Effectiveness Analysis |
| BCEE |
The Bayesian Causal Effect Estimation Algorithm |
| BCEs0 |
Bayesian Models for Cost-Effectiveness Analysis in the Presence of Structural Zero Costs |
| Bchron |
Radiocarbon Dating, Age-Depth Modelling, Relative Sea Level Rate Estimation, and Non-Parametric Phase Modelling |
| Bclim |
Bayesian Palaeoclimate Reconstruction from Pollen Data |
| bclust |
Bayesian Hierarchical Clustering Using Spike and Slab Models |
| bcp |
Bayesian Analysis of Change Point Problems |
| bcpa |
Behavioral change point analysis of animal movement |
| bcpmeta |
Bayesian Multiple Changepoint Detection Using Metadata |
| BCRA |
Breast Cancer Risk Assessment |
| bcRep |
Advanced Analysis of B Cell Receptor Repertoire Data |
| bcrm |
Bayesian Continual Reassessment Method for Phase I Dose-Escalation Trials |
| bcrypt |
'Blowfish' Password Hashing Algorithm |
| bcv |
Cross-Validation for the SVD (Bi-Cross-Validation) |
| bda |
Density Estimation for Grouped Data |
| bde |
Bounded Density Estimation |
| BDgraph |
Bayesian Graph Selection Based on Birth-Death MCMC Approach |
| bdots |
Bootstrapped Differences of Time Series |
| bdpopt |
Optimisation of Bayesian Decision Problems |
| bdpv |
Inference and design for predictive values in binary diagnostic tests |
| bdrift |
Beta Drift Analysis |
| bdscale |
Remove Weekends and Holidays from ggplot2 Axes |
| bdsmatrix |
Routines for Block Diagonal Symmetric matrices |
| bdvis |
Biodiversity Data Visualizations |
| BDWreg |
Bayesian Inference for Discrete Weibull Regression |
| bdynsys |
Bayesian Dynamical System Model |
| beadarrayFilter |
Bead filtering for Illumina bead arrays |
| beadarrayMSV |
Analysis of Illumina BeadArray SNP data including MSV markers |
| beanplot |
Visualization via Beanplots (like Boxplot/Stripchart/Violin Plot) |
| BEANSP |
Bayesian Estimate of Age-specific Nest Survival Probabilities |
| beanz |
Bayesian Analysis of Heterogeneous Treatment Effect |
| BEDASSLE |
Quantifies effects of geo/eco distance on genetic differentiation |
| BEDMatrix |
Matrices Backed by Binary PED Files (PLINK) |
| bedr |
Genomic Region Processing using Tools Such as Bedtools, Bedops and Tabix |
| beepr |
Easily Play Notification Sounds on any Platform |
| beeswarm |
The Bee Swarm Plot, an Alternative to Stripchart |
| benchden |
28 benchmark densities from Berlinet/Devroye (1994) |
| benchmark |
Benchmark Experiments Toolbox |
| Benchmarking |
Benchmark and Frontier Analysis Using DEA and SFA |
| benchmarkme |
Crowd Sourced System Benchmarks |
| benchmarkmeData |
Data Set for the 'benchmarkme' Package |
| benford.analysis |
Benford Analysis for Data Validation and Forensic Analytics |
| BenfordTests |
Statistical Tests for Evaluating Conformity to Benford's Law |
| bentcableAR |
Bent-Cable Regression for Independent Data or Autoregressive Time Series |
| BEQI2 |
Benthic Ecosystem Quality Index 2 |
| ber |
Batch Effects Removal |
| Bergm |
Bayesian analysis for exponential random graph models |
| berryFunctions |
Function Collection Related to Plotting and Hydrology |
| Bessel |
Bessel – Bessel Functions Computations and Approximations |
| BEST |
Bayesian Estimation Supersedes the t-Test |
| bestglm |
Best Subset GLM |
| BetaBit |
Mini Games from Adventures of Beta and Bit |
| betafam |
Detecting rare variants for quantitative traits using nuclear families |
| betalink |
Beta-Diversity of Species Interactions |
| betapart |
Partitioning beta diversity into turnover and nestedness components |
| betaper |
Functions to incorporate taxonomic uncertainty on multivariate analyses of ecological data |
| betareg |
Beta Regression |
| betas |
Standardized Beta Coefficients |
| betategarch |
Simulation, estimation and forecasting of Beta-Skew-t-EGARCH models |
| bethel |
Bethel's algorithm |
| BeviMed |
Bayesian Evaluation of Variant Involvement in Mendelian Disorders |
| bezier |
Bezier Curve and Spline Toolkit |
| bfa |
Bayesian Factor Analysis |
| bfast |
Breaks For Additive Season and Trend (BFAST) |
| bfork |
Basic Unix Process Control |
| bfp |
Bayesian Fractional Polynomials |
| bgeva |
Binary Generalized Extreme Value Additive Models |
| bglm |
Bayesian Estimation in Generalized Linear Models |
| BGLR |
Bayesian Generalized Linear Regression |
| bgmfiles |
Example BGM Files for the Atlantis Ecosystem Model |
| bgmm |
Gaussian Mixture Modeling Algorithms And The Belief-based Mixture Modeling |
| BGPhazard |
Markov Beta and Gamma Processes for Modeling Hazard Rates |
| BGSIMD |
Block Gibbs Sampler with Incomplete Multinomial Distribution |
| BH |
Boost C++ Header Files |
| Bhat |
General likelihood exploration |
| BHH2 |
Useful Functions for Box, Hunter and Hunter II |
| biasbetareg |
Bias correction of the parameter estimates of the beta regression model |
| BiasedUrn |
Biased Urn Model Distributions |
| bibliometrix |
Bibliometric and Co-Citation Analysis Tool |
| bibliospec |
Reading Mass Spectrometric Search Results |
| bibtex |
bibtex parser |
| biclust |
BiCluster Algorithms |
| BiDimRegression |
Calculates the bidimensional regression between two 2D configurations |
| bifactorial |
Inferences for bi- and trifactorial trial designs |
| BIFIEsurvey |
Tools for Survey Statistics in Educational Assessment |
| bigalgebra |
BLAS routines for native R matrices and big.matrix objects |
| biganalytics |
Utilities for 'big.matrix' Objects from Package 'bigmemory' |
| bigdata |
Big Data Analytics |
| BIGDAWG |
Case-Control Analysis of Multi-Allelic Loci |
| bigGP |
Distributed Gaussian Process Calculations |
| biglars |
Scalable Least-Angle Regression and Lasso |
| biglasso |
Big Lasso: Extending Lasso Model Fitting to Big Data in R |
| biglm |
bounded memory linear and generalized linear models |
| bigmemory |
Manage Massive Matrices with Shared Memory and Memory-Mapped Files |
| bigmemory.sri |
A shared resource interface for Bigmemory Project packages |
| bigml |
Bindings for the BigML API |
| bigpca |
PCA, Transpose and Multicore Functionality for 'big.matrix' Objects |
| bigQueryR |
Interface with Google BigQuery with Shiny Compatibility |
| BigQuic |
Big Quadratic Inverse Covariance Estimation |
| bigReg |
Generalized Linear Models (GLM) for Large Data Sets |
| bigrquery |
An Interface to Google's 'BigQuery' 'API' |
| bigRR |
Generalized Ridge Regression (with special advantage for p >> n cases) |
| bigsplines |
Smoothing Splines for Large Samples |
| bigtabulate |
Table, Apply, and Split Functionality for Matrix and 'big.matrix' Objects |
| BigTSP |
Top Scoring Pair based methods for classification |
| BigVAR |
Dimension Reduction Methods for Multivariate Time Series |
| bild |
BInary Longitudinal Data |
| bimetallic |
Power for SNP analyses using silver standard cases |
| bimixt |
Estimates Mixture Models for Case-Control Data |
| Binarize |
Binarization of One-Dimensional Data |
| BinaryEMVS |
Variable Selection for Binary Data Using the EM Algorithm |
| BinaryEPPM |
Mean and Variance Modeling of Binary Data |
| binaryLogic |
Binary Logic |
| binda |
Multi-Class Discriminant Analysis using Binary Predictors |
| bindata |
Generation of Artificial Binary Data |
| binequality |
Methods for Analyzing Binned Income Data |
| bingat |
Binary Graph Analysis Tools |
| binGroup |
Evaluation and experimental design for binomial group testing |
| binhf |
Haar-Fisz functions for binomial data |
| binMto |
Asymptotic simultaneous confidence intervals for many-to-one comparisons of proportions |
| BinNonNor |
Data Generation with Binary and Continuous Non-Normal Components |
| BinNor |
Simultaneous Generation of Multivariate Binary and Normal Variates |
| binom |
Binomial Confidence Intervals For Several Parameterizations |
| binomen |
'Taxonomic' Specification and Parsing Methods |
| binomialcftp |
Generates binomial random numbers via the coupling from the past algorithm |
| binomlogit |
Efficient MCMC for Binomial Logit Models |
| binomSamSize |
Confidence intervals and sample size determination for a binomial proportion under simple random sampling and pooled sampling |
| binomTools |
Performing diagnostics on binomial regression models |
| BinOrdNonNor |
Concurrent Generation of Binary, Ordinal and Continuous Data |
| binr |
Cut Numeric Values into Evenly Distributed Groups |
| binseqtest |
Exact Binary Sequential Designs and Analysis |
| binst |
Data Preprocessing, Binning for Classification and Regression |
| bio3d |
Biological Structure Analysis |
| Biocomb |
Feature Selection and Classification with the Embedded Validation Procedures for Biomedical Data Analysis |
| Biodem |
Biodemography Functions |
| BiodiversityR |
Package for Community Ecology and Suitability Analysis |
| BIOdry |
Multilevel Modeling of Dendroclimatical Fluctuations |
| BioFTF |
Biodiversity Assessment Using Functional Tools |
| biogas |
Process Biogas Data and Predict Biogas Production |
| biogeo |
Point Data Quality Assessment and Coordinate Conversion |
| BioGeoBEARS |
BioGeography with Bayesian (and Likelihood) Evolutionary Analysis in R Scripts |
| biogram |
N-Gram Analysis of Biological Sequences |
| Biograph |
Explore Life Histories |
| bioinactivation |
Simulation of Dynamic Microbial Inactivation |
| bio.infer |
Predict environmental conditions from biological observations |
| biom |
An interface package (beta) for the BIOM file format |
| BioMark |
Find Biomarkers in Two-Class Discrimination Problems |
| biomartr |
Functional Annotation and Biological Data Retrieval with R |
| biomod2 |
Ensemble Platform for Species Distribution Modeling |
| BIOM.utils |
Utilities for the BIOM (Biological Observation Matrix) Format |
| bionetdata |
Biological and chemical data networks |
| BioPET |
Biomarker Prognostic Enrichment Tool |
| BioPhysConnectoR |
BioPhysConnectoR |
| bioplots |
Visualization of Overlapping Results with Heatmap |
| bioPN |
Simulation of deterministic and stochastic biochemical reaction networks using Petri Nets |
| biorxivr |
Search and Download Papers from the bioRxiv Preprint Server |
| bios2mds |
From BIOlogical Sequences to MultiDimensional Scaling |
| biosignalEMG |
Tools for Electromyogram Signals (EMG) Analysis |
| BioStatR |
Initiation à la Statistique avec R |
| biotic |
Calculation of Freshwater Biotic Indices |
| biotools |
Tools for Biometry and Applied Statistics in Agricultural Science |
| bipartite |
Visualising Bipartite Networks and Calculating Some (Ecological) Indices |
| biplotbootGUI |
Bootstrap on Classical Biplots and Clustering Disjoint Biplot |
| BiplotGUI |
Interactive Biplots in R |
| BIPOD |
BIPOD (Bayesian Inference for Partially Observed diffusions) |
| birdring |
Methods to Analyse Ring Re-Encounter Data |
| birk |
MA Birk's Functions |
| bisectr |
Tools to find bad commits with git bisect |
| BiSEp |
Toolkit to Identify Candidate Synthetic Lethality |
| bisoreg |
Bayesian Isotonic Regression with Bernstein Polynomials |
| bit |
A class for vectors of 1-bit booleans |
| bit64 |
A S3 Class for Vectors of 64bit Integers |
| bitops |
Bitwise Operations |
| BiTrinA |
Binarization and Trinarization of One-Dimensional Data |
| bitrugs |
Bayesian Inference of Transmission Routes Using Genome Sequences |
| BivarP |
Estimating the Parameters of Some Bivariate Distributions |
| bivarRIpower |
Sample size calculations for bivariate longitudinal data |
| biwavelet |
Conduct Univariate and Bivariate Wavelet Analyses |
| biwt |
Functions to compute the biweight mean vector and covariance & correlation matrices |
| bizdays |
Business Days Calculations and Utilities |
| bkmr |
Bayesian Kernel Machine Regression |
| BKPC |
Bayesian Kernel Projection Classifier |
| blackbox |
Black Box Optimization and Exploration of Parameter Space |
| BlakerCI |
Blaker's Binomial Confidence Limits |
| BlandAltmanLeh |
Plots (Slightly Extended) Bland-Altman Plots |
| blatr |
Send Emails Using 'Blat' for Windows |
| Blaunet |
Calculate and Analyze Blau Status for Measuring Social Distance |
| blavaan |
Bayesian Latent Variable Analysis |
| BLCOP |
Black-Litterman and Copula Opinion Pooling Frameworks |
| blendedLink |
A New Link Function that Blends Two Specified Link Functions |
| blender |
Analyze biotic homogenization of landscapes |
| blighty |
United Kingdom coastlines |
| blkergm |
Fitting block ERGM given the block structure on social networks |
| blm |
Binomial linear and linear-expit regression |
| blme |
Bayesian Linear Mixed-Effects Models |
| blmeco |
Data Files and Functions Accompanying the Book "Bayesian Data Analysis in Ecology using R, BUGS and Stan" |
| blockcluster |
Coclustering Package for Binary, Categorical, Contingency and Continuous Data-Sets |
| blockmatrix |
blockmatrix: Tools to solve algebraic systems with partitioned matrices |
| BlockMessage |
Creates strings that show a text message in 8 by 8 block letters |
| blockmodeling |
An R package for Generalized and classical blockmodeling of valued networks |
| blockmodels |
Latent and Stochastic Block Model Estimation by a 'V-EM' Algorithm |
| blockrand |
Randomization for block random clinical trials |
| blocksdesign |
Nested Block Designs for Unstructured Treatments |
| blockseg |
Two Dimensional Change-Points Detection |
| blockTools |
Block, Assign, and Diagnose Potential Interference in Randomized Experiments |
| Blossom |
Statistical Comparisons with Distance-Function Based Permutation Tests |
| BLR |
Bayesian Linear Regression |
| blsAPI |
Request Data from the U.S. Bureau of Labor Statistics API |
| blscrapeR |
An API Wrapper for the Bureau of Labor Statistics (BLS) |
| BMA |
Bayesian Model Averaging |
| bmd |
Benchmark dose analysis for dose-response data |
| bmem |
Mediation analysis with missing data using bootstrap |
| bmeta |
Bayesian Meta-Analysis and Meta-Regression |
| BMhyd |
PCM for Hybridization |
| Bmix |
Bayesian Sampling for Stick-Breaking Mixtures |
| bmk |
MCMC diagnostics package |
| bmlm |
Bayesian Multilevel Mediation |
| bmmix |
Bayesian multinomial mixture |
| BMN |
The pseudo-likelihood method for pairwise binary markov networks |
| bmp |
Read Windows Bitmap (BMP) images |
| bmrm |
Bundle Methods for Regularized Risk Minimization Package |
| BMRV |
Bayesian Models for Rare Variant Association Analysis |
| BMS |
Bayesian Model Averaging Library |
| BNDataGenerator |
Data Generator based on Bayesian Network Model |
| bnlearn |
Bayesian Network Structure Learning, Parameter Learning and Inference |
| bnnSurvival |
Bagged k-Nearest Neighbors Survival Prediction |
| bnormnlr |
Bayesian Estimation for Normal Heteroscedastic Nonlinear Regression Models |
| BNPdensity |
Ferguson-Klass Type Algorithm for Posterior Normalized Random Measures |
| bnpmr |
Bayesian monotonic nonparametric regression |
| BNPTSclust |
A Bayesian Nonparametric Algorithm for Time Series Clustering |
| BNSP |
Bayesian Non- and Semi-Parametric Model Fitting |
| bnspatial |
Spatial Implementation of Bayesian Networks and Mapping |
| bnstruct |
Bayesian Network Structure Learning from Data with Missing Values |
| boa |
Bayesian Output Analysis Program (BOA) for MCMC |
| BoardGames |
Board Games and Tools for Building Board Games |
| bodenmiller |
Profilling of Peripheral Blood Mononuclear Cells using CyTOF |
| BOG |
Bacterium and Virus Analysis of Orthologous Groups (BOG) is a Package for Identifying Differentially Regulated Genes in the Light of Gene Functions |
| boilerpipeR |
Interface to the Boilerpipe Java Library |
| BOIN |
Bayesian Optimal INterval (BOIN) Design for Single-Agent and Drug- Combination Phase I Clinical Trials |
| bold |
Interface to Bold Systems 'API' |
| Bolstad |
Functions for Elementary Bayesian Inference |
| Bolstad2 |
Bolstad functions |
| BonEV |
An Improved Multiple Testing Procedure for Controlling False Discovery Rates |
| bookdown |
Authoring Books with R Markdown |
| boolean3 |
Boolean Binary Response Models |
| BoolNet |
Construction, Simulation and Analysis of Boolean Networks |
| Boom |
Bayesian Object Oriented Modeling |
| BoomSpikeSlab |
MCMC for Spike and Slab Regression |
| boostmtree |
Boosted Multivariate Trees for Longitudinal Data |
| boostr |
A modular framework to bag or boost any estimation procedure |
| boostSeq |
Optimized GWAS cohort subset selection for resequencing studies |
| boot |
Bootstrap Functions (Originally by Angelo Canty for S) |
| bootES |
Bootstrap Effect Sizes |
| bootLR |
Bootstrapped Confidence Intervals for (Negative) Likelihood Ratio Tests |
| bootnet |
Bootstrap Methods for Various Network Estimation Routines |
| BootPR |
Bootstrap Prediction Intervals and Bias-Corrected Forecasting |
| bootRes |
Bootstrapped Response and Correlation Functions |
| bootruin |
A bootstrap test for the probability of ruin in the classical risk process |
| bootspecdens |
Testing equality of spectral densities |
| bootsPLS |
Bootstrap Subsamplings of Sparse Partial Least Squares - Discriminant Analysis for Classification and Signature Identification |
| bootStepAIC |
Bootstrap stepAIC |
| bootstrap |
Functions for the Book "An Introduction to the Bootstrap" |
| bootSVD |
Fast, Exact Bootstrap Principal Component Analysis for High Dimensional Data |
| bootTimeInference |
Robust Performance Hypothesis Testing with the Sharpe Ratio |
| boottol |
Bootstrap Tolerance Levels for Credit Scoring Validation Statistics |
| BootWPTOS |
Test Stationarity using Bootstrap Wavelet Packet Tests |
| boral |
Bayesian Ordination and Regression AnaLysis |
| Boruta |
Wrapper Algorithm for All-Relevant Feature Selection |
| BoSSA |
a Bunch of Structure and Sequence Analysis |
| boussinesq |
Analytic Solutions for (ground-water) Boussinesq Equation |
| boxplotdbl |
Double Box Plot for Two-Axes Correlation |
| boxr |
Interface for the 'Box.com API' |
| bpa |
Basic Pattern Analysis |
| bpca |
Biplot of Multivariate Data Based on Principal Components Analysis |
| bpcp |
Beta Product Confidence Procedure for Right Censored Data |
| bPeaks |
bPeaks: an intuitive peak-calling strategy to detect transcription factor binding sites from ChIP-seq data in small eukaryotic genomes |
| BPEC |
Bayesian Phylogeographic and Ecological Clustering |
| bpkde |
Back-Projected Kernel Density Estimation |
| bqtl |
Bayesian QTL Mapping Toolkit |
| BradleyTerry2 |
Bradley-Terry Models |
| braidReports |
Visualize Combined Action Response Surfaces and Report BRAID Analyses |
| braidrm |
Fitting Dose Response with the BRAID Combined Action Model |
| BrailleR |
Improved Access for Blind Users |
| brainGraph |
Graph Theory Analysis of Brain MRI Data |
| brainR |
Helper functions to misc3d and rgl packages for brain imaging |
| brainwaver |
Basic wavelet analysis of multivariate time series with a visualisation and parametrisation using graph theory |
| Branching |
Simulation and Estimation for Branching Processes |
| braQCA |
Bootstrapped Robustness Assessment for Qualitative Comparative Analysis |
| breakage |
SICM pipette tip geometry estimation |
| breakaway |
Species Richness Estimation and Modeling |
| breakpoint |
An R Package for Multiple Break-Point Detection via the Cross-Entropy Method |
| bReeze |
Functions for wind resource assessment |
| brew |
Templating Framework for Report Generation |
| brewdata |
Extracting Usable Data from the Grad Cafe Results Search |
| brglm |
Bias reduction in binomial-response generalized linear models |
| bride |
Brier score decomposition of probabilistic forecasts for binary events |
| bridgedist |
An Implementation of the Bridge Distribution with Logit-Link as in Wang and Louis (2003) |
| brms |
Bayesian Regression Models using Stan |
| brnn |
Bayesian Regularization for Feed-Forward Neural Networks |
| Brobdingnag |
Very large numbers in R |
| broman |
Karl Broman's R Code |
| broom |
Convert Statistical Analysis Objects into Tidy Data Frames |
| brotli |
A Compression Format Optimized for the Web |
| brr |
Bayesian Inference on the Ratio of Two Poisson Rates |
| brranching |
Fetch 'Phylogenies' from Many Sources |
| BRugs |
Interface to the 'OpenBUGS' MCMC Software |
| BSagri |
Statistical methods for safety assessment in agricultural field trials |
| BSDA |
Basic Statistics and Data Analysis |
| BSGS |
Bayesian Sparse Group Selection |
| BSGW |
Bayesian Survival Model with Lasso Shrinkage Using Generalized Weibull Regression |
| bshazard |
Nonparametric Smoothing of the Hazard Function |
| BsMD |
Bayes Screening and Model Discrimination |
| bspec |
Bayesian Spectral Inference |
| bspmma |
bspmma: Bayesian Semiparametric Models for Meta-Analysis |
| BSquare |
Bayesian Simultaneous Quantile Regression |
| BSSasymp |
Asymptotic Covariance Matrices of Some BSS Mixing and Unmixing Matrix Estimates |
| bssn |
Birnbaum-Saunders Model Based on Skew-Normal Distribution |
| bst |
Gradient Boosting |
| bsts |
Bayesian Structural Time Series |
| btergm |
Temporal Exponential Random Graph Models by Bootstrapped Pseudolikelihood |
| btf |
Estimates univariate function via Bayesian trend filtering |
| BTLLasso |
Modelling Heterogeneity in Paired Comparison Data |
| BTR |
Training and Analysing Asynchronous Boolean Models |
| BTSPAS |
Bayesian Time-Strat. Population Analysis |
| BTYD |
Implementing Buy 'Til You Die Models |
| bujar |
Buckley-James Regression for Survival Data with High-Dimensional Covariates |
| bunchr |
Analyze Bunching in a Kink or Notch Setting |
| burnr |
Advanced Fire History Analysis in R |
| BurStFin |
Burns Statistics Financial |
| BurStMisc |
Burns Statistics miscellaneous |
| bursts |
Markov model for bursty behavior in streams |
| bvarsv |
Bayesian Analysis of a Vector Autoregressive Model with Stochastic Volatility and Time-Varying Parameters |
| bvenn |
A Simple alternative to proportional Venn diagrams |
| bvls |
The Stark-Parker algorithm for bounded-variable least squares |
| bvpSolve |
Solvers for Boundary Value Problems of Differential Equations |
| BVS |
Bayesian Variant Selection: Bayesian Model Uncertainty Techniques for Genetic Association Studies |
| bWGR |
Bagging Whole-Genome Regression |
| BWStest |
Baumgartner Weiss Schindler Test of Equal Distributions |